Magerit-3

Magerit-3

Magerit es un clúster compuesto por 68 nodos Lenovo ThinkSystem SD530 cada uno de los cuales dispone de 2  procesadores Intel Xeon Gold 6230 de 20 cores @ 2.10 GHz (1.344 GFLOPS), 192 GB de RAM y 480 GB de SSD local.

Los nodos están interconectados por dos redes 25 Gbps de baja latencia una de ellas con arquitectura flat-tree destinada en exclusiva al paso de mensajes.

La práctica totalidad de la pila de software es Open-Source, empezando por el Sistema Operativo (CentOS), el gestor y planificador de recursos (SLURM), el sistema de gestión de aplicaciones (Lmod) y la gran parte del software instalado y todos los sistemas auxiliares necesarios. Esto hace que el sistema sea lo más parecido a lo que puede utilizar cualquier investigación facilitando el salto a la infraestructura.

Magerit3
 Tiempo de espera medio 
# Procesadores: 2.720  cores
Memoria: 13.056  GB
Potencia: 182,78  TFLOPS Rpeak

Todos los nodos tienen acceso a un sistema de almacenamiento compartido basado en Lustre

Software

El sistema tiene una amplia variedad de software preinstalado y listo para utilizar, que día a día se amplía. Si se necesita un software que no aparece en la relación adjunta, solicítelo al Centro de Atención a Usuarios (CAU) y se analizará la viabilidad de su implantación.

Dentro del catálogo existe software que necesita licencia o es un producto comercializado. Todo grupo de investigación que necesite acceder a este tipo de software o requiera se instale uno nuevo, deberá acreditar que dispone de licencia que le autoriza para su instalación en las infraestructuras del CeSViMa.

ATK

2.28.1-foss-2018b

Autoconf

2.69-GCCcore-6.3.0

2.69-GCCcore-6.4.0

2.69-GCCcore-7.3.0

2.69-GCCcore-8.2.0

2.69

Automake

1.15-GCCcore-6.3.0

1.15

1.15.1-GCCcore-6.4.0

1.16.1-GCCcore-7.3.0

1.16.1-GCCcore-8.2.0

Autotools

20150215-GCCcore-6.3.0

20150215

20170619-GCCcore-6.4.0

20180311-GCCcore-7.3.0

20180311-GCCcore-8.2.0

Bazel

0.11.1-GCCcore-6.4.0

0.18.0-GCCcore-7.3.0

0.20.0-GCCcore-8.2.0

Bison

3.0.4-GCCcore-4.9.3

3.0.4-GCCcore-4.9.4

3.0.4-GCCcore-6.3.0

3.0.4-GCCcore-6.4.0

3.0.4-GCCcore-7.3.0

3.0.4

3.0.5-GCCcore-6.4.0

3.0.5-GCCcore-7.3.0

3.0.5-GCCcore-8.2.0

3.0.5

Boost

1.66.0-intel-2018a

1.67.0-foss-2018b

1.70.0-gompi-2019a

1.70.0-iimpi-2019a

CGAL

4.11.1-foss-2018b-Python-2.7.15

4.11.1-intel-2018a-Python-2.7.14

CMake

3.7.2-GCCcore-6.3.0

3.7.2-GCCcore-6.4.0

3.9.1-GCCcore-6.4.0

3.9.4-GCCcore-6.4.0

3.9.5-GCCcore-6.4.0

3.10.2-GCCcore-6.4.0

3.11.1-GCCcore-6.4.0

3.11.4-GCCcore-7.3.0

3.12.1-GCCcore-7.3.0

3.13.3-GCCcore-8.2.0

DBus

1.13.6-GCCcore-7.3.0

Doxygen

1.8.13-GCCcore-6.4.0

1.8.14-GCCcore-7.3.0

ELPA

2016.11.001.pre-intel-2018b

2018.11.001-intel-2019a

Eigen

3.3.4

FFTW

3.3.6-intel-2017b

3.3.8-gompi-2018b

3.3.8-gompi-2019a

3.3.8-intel-2018b

FFmpeg

4.1-foss-2018b

FSL

5.0.11-foss-2018b

FreeSurfer

6.0.1-centos6_x86_64

FriBidi

1.0.2-GCCcore-6.4.0

1.0.5-GCCcore-7.3.0

GCC

4.9.4-2.25

6.4.0-2.28

7.3.0-2.30

8.2.0-2.31.1

GCCcore

4.9.3

4.9.4

6.3.0

6.4.0

7.3.0

8.2.0

GDAL

2.2.3-foss-2018b-Python-3.6.6

2.2.3-intel-2018b-Python-3.6.6

GEOS

3.6.2-foss-2018b-Python-3.6.6

3.6.2-intel-2018b-Python-3.6.6

GLib

2.54.3-GCCcore-6.4.0

2.54.3-GCCcore-7.3.0

GMP

6.1.2-GCCcore-6.4.0

6.1.2-GCCcore-7.3.0

6.1.2-GCCcore-8.2.0

GObject-Introspection

1.54.1-foss-2018b-Python-2.7.15

1.54.1-intel-2018a-Python-2.7.14

GROMACS

2016.3-intel-2017a

2018.2-foss-2018b

2018.2-intel-2017b

2019-foss-2018b

GSL

2.5-GCC-7.3.0-2.30

2.5-iccifort-2018.3.222-GCC-7.3.0-2.30

GTK+

2.24.32-foss-2018b

Gdk-Pixbuf

2.36.12-foss-2018b

HDF5

1.10.1-intel-2017b

1.10.1-intel-2018a

1.10.2-foss-2018b

1.10.2-intel-2018b

1.10.5-gompi-2019a

1.10.5-iimpi-2019a

HPL

2.3-intel-2019a

2.3-iomkl-2019.01

HarfBuzz

1.7.5-intel-2018a

2.2.0-foss-2018b

Hypre

2.14.0-intel-2018a

2.15.1-foss-2019a

2.15.1-intel-2019a

ICU

61.1-GCCcore-7.3.0

JasPer

2.0.12-GCCcore-6.4.0

2.0.12-intel-2017b

2.0.14-GCCcore-7.3.0

Java

1.8.0_121

1.8.0_162

1.8(@Java/1.8.0_212)

1.8.0_212

Julia

1.1.1-linux-x86_64

Keras

2.2.4-foss-2018b-Python-3.6.6

2.2.4-intel-2018a-Python-3.6.4

LAME

3.100-GCCcore-7.3.0

LLVM

5.0.1-GCCcore-6.4.0

6.0.0-GCCcore-7.3.0

LibTIFF

4.0.9-GCCcore-7.3.0

4.0.9-intel-2018b

M4

1.4.17-GCCcore-4.9.3

1.4.17-GCCcore-4.9.4

1.4.17

1.4.18-GCCcore-6.3.0

1.4.18-GCCcore-6.4.0

1.4.18-GCCcore-7.3.0

1.4.18-GCCcore-8.2.0

1.4.18

MATLAB

2017a

2018b

METIS

5.1.0-foss-2018b

5.1.0-GCCcore-6.4.0

5.1.0-GCCcore-8.2.0

MPFR

4.0.1-GCCcore-6.4.0

4.0.1-GCCcore-7.3.0

Mako

1.0.7-foss-2018b-Python-2.7.15

1.0.7-intel-2018a-Python-2.7.14

1.0.7-intel-2018b-Python-2.7.15

Mesa

17.3.6-intel-2018a

18.1.1-foss-2018b

18.1.1-intel-2018b

NAMD

2.12-intel-2017b-mpi

2.13-foss-2018b-mpi

NASM

2.13.03-GCCcore-6.4.0

2.13.03-GCCcore-7.3.0

NLopt

2.4.2-GCCcore-7.3.0

NSPR

4.20-GCCcore-7.3.0

NSS

3.39-GCCcore-7.3.0

OpenBLAS

0.3.1-GCC-7.3.0-2.30

0.3.5-GCC-8.2.0-2.31.1

OpenCV

4.0.1-foss-2018b-Python-3.6.6

OpenFOAM

v1806-foss-2018b

v1812-foss-2018b

OpenMPI

2.1.2-GCC-6.4.0-2.28

3.1.1-GCC-7.3.0-2.30

3.1.1-iccifort-2018.3.222-GCC-7.3.0-2.30

3.1.3-GCC-8.2.0-2.31.1

3.1.3-iccifort-2019.1.144-GCC-8.2.0-2.31.1

PCRE

8.41-GCCcore-6.4.0

8.41-GCCcore-7.3.0

PETSc

3.9.3-intel-2018a

3.11.1-foss-2019a

3.11.1-intel-2019a

PROJ

5.0.0-foss-2018b

5.0.0-intel-2018b

Pango

1.41.1-intel-2018a

1.42.4-foss-2018b

ParMETIS

4.0.3-gompi-2019a

4.0.3-iimpi-2019a

4.0.3-intel-2018a

ParaView

5.4.1-foss-2018b-mpi

5.4.1-intel-2018a-mpi

Perl

5.26.1-GCCcore-6.4.0

5.28.0-GCCcore-7.3.0

5.28.1-GCCcore-8.2.0

PyYAML

3.12-intel-2018a-Python-3.6.4

3.13-foss-2018b-Python-3.6.6

Python

2.7.14-GCCcore-6.4.0-bare

2.7.14-intel-2018a

2.7.15-foss-2018b

2.7.15-GCCcore-7.3.0-bare

2.7.15-GCCcore-8.2.0

2.7.15-intel-2018b

3.6.4-intel-2018a

3.6.6-foss-2018b

3.6.6-intel-2018b

3.7.2-GCCcore-8.2.0

Qt

4.8.7-intel-2018a

Qt5

5.10.1-foss-2018b

5.10.1-intel-2018a

R

3.5.1-foss-2018b

3.5.1-intel-2018b

SCOTCH

6.0.6-foss-2018b

6.0.6-gompi-2019a

6.0.6-iimpi-2019a

6.0.6-intel-2018a

SQLite

3.20.1-GCCcore-6.4.0

3.21.0-GCCcore-6.4.0

3.24.0-GCCcore-7.3.0

3.27.2-GCCcore-8.2.0

STAR-CCM+

13.02.011

14.04.011

SWIG

3.0.12-foss-2018b-Python-3.6.6

3.0.12-intel-2018b-Python-3.6.6

ScaLAPACK

2.0.2-gompi-2018b-OpenBLAS-0.3.1

2.0.2-gompi-2019a-OpenBLAS-0.3.5

SciPy-bundle

2019.03-foss-2019a

SuiteSparse

5.1.2-intel-2018a-METIS-5.1.0

5.4.0-foss-2019a-METIS-5.1.0

5.4.0-intel-2019a-METIS-5.1.0

Szip

2.1.1-GCCcore-6.4.0

2.1.1-GCCcore-7.3.0

2.1.1-GCCcore-8.2.0

Tcl

8.6.7-GCCcore-6.4.0

8.6.8-GCCcore-6.4.0

8.6.8-GCCcore-7.3.0

8.6.9-GCCcore-8.2.0

TensorFlow

1.8.0-intel-2018a-Python-3.6.4

1.12.0-foss-2018b-Python-3.6.6

1.13.1-foss-2019a-Python-3.7.2

Theano

1.0.2-intel-2018a-Python-3.6.4

1.0.3-foss-2018b-Python-3.6.6

Tk

8.6.8-GCCcore-7.3.0

UDUNITS

2.2.26-foss-2018b

2.2.26-intel-2018b

VASP

5.3.5-intel-2018b

5.3.5.MN-VFM_2017-A-intel-2018b

5.4.4-intel-2016.02-GCC-4.9

VTK

8.1.1-foss-2018b-Python-2.7.15

WRF

3.9.1.1-intel-2017b-dmpar

X11

20180131-GCCcore-6.4.0

20180604-GCCcore-7.3.0

XML-Parser

2.44_01-GCCcore-6.4.0-Perl-5.26.1

2.44_01-GCCcore-7.3.0-Perl-5.28.0

XZ

5.2.3-GCCcore-6.4.0

5.2.4-GCCcore-7.3.0

5.2.4-GCCcore-8.2.0

Yasm

1.3.0-GCCcore-7.3.0

ant

1.10.5-Java-1.8

binutils

2.25-GCCcore-4.9.3

2.25-GCCcore-4.9.4

2.25

2.27-GCCcore-6.3.0

2.27

2.28-GCCcore-6.4.0

2.28

2.30-GCCcore-7.3.0

2.30

2.31.1-GCCcore-8.2.0

2.31.1

bzip2

1.0.6-GCCcore-6.4.0

1.0.6-GCCcore-7.3.0

1.0.6-GCCcore-8.2.0

cURL

7.56.0-GCCcore-6.4.0

7.56.1-GCCcore-6.4.0

7.60.0-GCCcore-7.3.0

7.63.0-GCCcore-8.2.0

cairo

1.14.12-GCCcore-6.4.0

1.14.12-GCCcore-7.3.0

expat

2.2.5-GCCcore-6.4.0

2.2.5-GCCcore-7.3.0

2.2.6-GCCcore-8.2.0

flex

2.5.39-GCCcore-4.9.3

2.5.39

2.6.0-GCCcore-4.9.4

2.6.0

2.6.3-GCCcore-6.3.0

2.6.3

2.6.4-GCCcore-6.4.0

2.6.4-GCCcore-7.3.0

2.6.4-GCCcore-8.2.0

2.6.4

fontconfig

2.12.6-GCCcore-6.4.0

2.13.0-GCCcore-7.3.0

foss

2018b

2019a

freeglut

3.0.0-foss-2018b

freetype

2.9-GCCcore-6.4.0

2.9.1-GCCcore-7.3.0

gettext

0.19.8.1-GCCcore-6.4.0-libxml2-2.9.7

0.19.8.1-GCCcore-6.4.0

0.19.8.1-GCCcore-7.3.0

0.19.8.1

gnuplot

5.2.2-intel-2018a

5.2.6-foss-2018b

gompi

2018b

2019a

gperf

3.1-GCCcore-6.4.0

3.1-GCCcore-7.3.0

h5py

2.7.1-intel-2018a-Python-3.6.4

2.8.0-foss-2018b-Python-3.6.6

2.9.0-foss-2019a

help2man

1.47.4-GCCcore-6.3.0

1.47.4-GCCcore-6.4.0

1.47.4-GCCcore-7.3.0

1.47.4

1.47.7-GCCcore-8.2.0

hwloc

1.11.8-GCCcore-6.4.0

1.11.8-intel-2017a

1.11.10-GCCcore-7.3.0

1.11.11-GCCcore-8.2.0

icc

2016.2.181-GCC-4.9.3-2.25

2017.1.132-GCC-6.3.0-2.27

2017.4.196-GCC-6.4.0-2.28

2018.1.163-GCC-6.4.0-2.28

2018.3.222-GCC-7.3.0-2.30

2019.1.144-GCC-8.2.0-2.31.1

iccifort

2016.2.181-GCC-4.9.3-2.25

2017.1.132-GCC-6.3.0-2.27

2017.4.196-GCC-6.4.0-2.28

2018.1.163-GCC-6.4.0-2.28

2018.3.222-GCC-7.3.0-2.30

2019.1.144-GCC-8.2.0-2.31.1

ifort

2016.2.181-GCC-4.9.3-2.25

2017.1.132-GCC-6.3.0-2.27

2017.4.196-GCC-6.4.0-2.28

2018.1.163-GCC-6.4.0-2.28

2018.3.222-GCC-7.3.0-2.30

2019.1.144-GCC-8.2.0-2.31.1

iimpi

2016.02-GCC-4.9.3-2.25

2017a

2017b

2018a

2018b

2019a

imkl

11.3.2.181-iimpi-2016.02-GCC-4.9.3-2.25

2017.1.132-iimpi-2017a

2017.3.196-iimpi-2017b

2018.1.163-iimpi-2018a

2018.3.222-iimpi-2018b

2019.1.144-iimpi-2019a

2019.1.144-iompi-2019.01

impi

5.1.3.181-iccifort-2016.2.181-GCC-4.9.3-2.25

2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27

2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28

2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28

2018.3.222-iccifort-2018.3.222-GCC-7.3.0-2.30

2018.4.274-iccifort-2019.1.144-GCC-8.2.0-2.31.1

intel

2016.02-GCC-4.9

2017a

2017b

2018a

2018b

2019a

intltool

0.51.0-GCCcore-6.4.0-Perl-5.26.1

0.51.0-GCCcore-7.3.0-Perl-5.28.0

iomkl

2019.01

iompi

2019.01

libGLU

9.0.0-foss-2018b

9.0.0-intel-2018a

9.0.0-intel-2018b

libcerf

1.5-GCCcore-6.4.0

1.7-GCCcore-7.3.0

libdrm

2.4.91-GCCcore-6.4.0

2.4.92-GCCcore-7.3.0

libffi

3.2.1-GCCcore-6.4.0

3.2.1-GCCcore-7.3.0

3.2.1-GCCcore-8.2.0

libgd

2.2.5-GCCcore-7.3.0

2.2.5-intel-2018a

libgeotiff

1.4.2-foss-2018b

1.4.2-intel-2018b

libjpeg-turbo

1.5.3-GCCcore-6.4.0

2.0.0-GCCcore-7.3.0

libpciaccess

0.14-GCCcore-6.4.0

0.14-GCCcore-7.3.0

0.14-GCCcore-8.2.0

libpng

1.6.34-GCCcore-6.4.0

1.6.34-GCCcore-7.3.0

libreadline

7.0-GCCcore-6.4.0

7.0-GCCcore-7.3.0

8.0-GCCcore-8.2.0

libsndfile

1.0.28-GCCcore-7.3.0

libtool

2.4.6-GCCcore-6.3.0

2.4.6-GCCcore-6.4.0

2.4.6-GCCcore-7.3.0

2.4.6-GCCcore-8.2.0

2.4.6

libunwind

1.2.1-GCCcore-7.3.0

libxml2

2.9.4-GCCcore-6.4.0

2.9.7-GCCcore-6.4.0

2.9.8-GCCcore-7.3.0

2.9.8-GCCcore-8.2.0

libyaml

0.1.7-GCCcore-6.4.0

0.2.1-GCCcore-7.3.0

ncurses

6.0-GCCcore-6.3.0

6.0-GCCcore-6.4.0

6.0

6.1-GCCcore-6.4.0

6.1-GCCcore-7.3.0

6.1-GCCcore-8.2.0

netCDF-Fortran

4.4.4-intel-2017b

netCDF

4.4.1.1-intel-2017b

4.5.0-intel-2017b

4.6.1-foss-2018b

4.6.1-intel-2018b

nettle

3.4-foss-2018b

3.4-intel-2018a

3.4-intel-2018b

numactl

2.0.11-GCCcore-6.3.0

2.0.11-GCCcore-6.4.0

2.0.11-GCCcore-7.3.0

2.0.12-GCCcore-8.2.0

pixman

0.34.0-GCCcore-6.4.0

0.34.0-GCCcore-7.3.0

pkg-config

0.29.2-GCCcore-6.4.0

0.29.2-GCCcore-7.3.0

0.29.2-GCCcore-8.2.0

pkgconfig

1.3.1-foss-2018b-Python-3.6.6

1.3.1-intel-2018a-Python-3.6.4

1.5.1-GCCcore-8.2.0-python

protobuf

3.6.1-GCCcore-7.3.0

3.6.1.2-GCCcore-8.2.0

tcsh

6.20.00-GCCcore-6.4.0

util-linux

2.31.1-GCCcore-6.4.0

2.32-GCCcore-7.3.0

wheel

0.30.0-intel-2018a-Python-3.6.4

0.31.1-foss-2018b-Python-3.6.6

x264

20181203-GCCcore-7.3.0

x265

2.9-GCCcore-7.3.0

xorg-macros

1.19.1-GCCcore-6.4.0

1.19.2-GCCcore-7.3.0

1.19.2-GCCcore-8.2.0

zlib

1.2.8-GCCcore-4.9.3

1.2.8-GCCcore-4.9.4

1.2.8

1.2.11-GCCcore-6.3.0

1.2.11-GCCcore-6.4.0

1.2.11-GCCcore-7.3.0

1.2.11-GCCcore-8.2.0

1.2.11

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