Magerit es un clúster compuesto por 68 nodos Lenovo ThinkSystem SD530 cada uno de los cuales dispone de 2  procesadores Intel Xeon Gold 6230 de 20 cores @ 2.10 GHz (1.344 GFLOPS), 192 GB de RAM y 480 GB de SSD local.

Los nodos están interconectados por dos redes 25 Gbps de baja latencia una de ellas con arquitectura flat-tree destinada en exclusiva al paso de mensajes.

La práctica totalidad de la pila de software es Open-Source, empezando por el Sistema Operativo (CentOS), el gestor y planificador de recursos (SLURM), el sistema de gestión de aplicaciones (Lmod) y la gran parte del software instalado y todos los sistemas auxiliares necesarios. Esto hace que el sistema sea lo más parecido a lo que puede utilizar cualquier investigación facilitando el salto a la infraestructura.

 Nivel de ocupación muy alto 
# Procesadores: 2.720  cores
Memoria: 13.056  GB
Potencia: 182,78  TFLOPS Rpeak

Todos los nodos tienen acceso a un sistema de almacenamiento compartido basado en Lustre


El sistema tiene una amplia variedad de software preinstalado y listo para utilizar, que día a día se amplía. Si se necesita un software que no aparece en la relación adjunta, solicítelo al Centro de Atención a Usuarios (CAU) y se analizará la viabilidad de su implantación.

Dentro del catálogo existe software que necesita licencia o es un producto comercializado. Todo grupo de investigación que necesite acceder a este tipo de software o requiera se instale uno nuevo, deberá acreditar que dispone de licencia que le autoriza para su instalación en las infraestructuras del CeSViMa.

Bioinformatics, biology and biomedical


FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.

  •  6.0.1-centos6_x86_64


FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.

  •  5.0.11-foss-2018b


GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI builds.

  •  4.6.5-intel-2016a
  •  2016.3-intel-2017a
  •  2018.2-intel-2017b
  •  2018.2-foss-2018b
  •  2019-foss-2018b


MRtrix provides a set of tools to perform diffusion-weighted MR white-matter tractography in a manner robust to crossing fibres, using constrained spherical deconvolution (CSD) and probabilistic streamlines.

  •  3.0_RC2-foss-2017a-Python-2.7.13
  •  3.0.0-foss-2020a-Python-3.8.2
  •  3.0.2-foss-2018b-Python-2.7.15
  •  3.0.2-foss-2020a-Python-3.8.2


MRtrix3Tissue is a fork of the MRtrix3 project. It aims to add capabilities for 3-Tissue CSD modelling and analysis to a complete version of the MRtrix3 software.

  •  5.2.9-foss-2020a-Python-3.8.2

Computer Aided Engineering (incl. CFD)


a fast and scalable high-order solver for computational fluid dynamics

  •  17.0-intel-2018a


OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.

  •  v1806-foss-2018b
  •  v1812-foss-2018b
  •  6-intel-2018a


STAR-CCM+ is a complete multidisciplinary platform for the simulation of products and designs operating under real-world conditions.

  •  13.02.011
  •  14.04.011
  •  15.04.008

Chemistry, Computational Chemistry and Quantum Chemistry


LAMMPS (Large-scale Atomic/Molecular Massively Parallel Simulator) is a classical molecular dynamics simulation code designed to run efficiently on parallel computers.

  •  7Aug19-GCCcore-7.2.0
  •  7Aug19-foss-2019a-Python-2.7.15


libctl is a free Guile-based library implementing flexible control files for scientific simulations.

  •  3.2.2-foss-2018b


Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.

  •  4.3.4-iccifort-2019.1.144-GCC-8.2.0-2.31.1


NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.

  •  2.12-intel-2017b-mpi
  •  2.13-foss-2018b-mpi


ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- and multireference correlated ab initio methods. It can also treat environmental and relativistic effects.

  •  4.1.0-OpenMPI-3.1.3


PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.

  •  2.5.1-foss-2019a


Q is a set of Molecular Dynamics (MD) tools tailored to the following specific kinds of free energy calculations: Free Energy Perturbation (FEP) Empirical Valence Bond (EVB) Linear Interaction Energies (LIE)

  •  20180205-gompi-2019a
  •  20180205-foss-2019a
  •  20180205-gompi-2019b


Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).

  •  6.4.1-intel-2019a



The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).

  •  4.9.4-2.25
  •  6.3.0-2.27
  •  6.4.0-2.28
  •  7.3.0-2.30
  •  8.2.0-2.31.1
  •  8.3.0
  •  9.3.0


The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).

  •  4.9.3
  •  4.9.4
  •  6.3.0
  •  6.4.0
  •  7.2.0
  •  7.3.0
  •  8.2.0
  •  8.3.0
  •  9.3.0


C and C++ compiler from Intel

  •  2016.1.150-GCC-4.9.3-2.25
  •  2016.2.181-GCC-4.9.3-2.25
  •  2017.1.132-GCC-6.3.0-2.27
  •  2017.4.196-GCC-6.4.0-2.28
  •  2018.1.163-GCC-6.4.0-2.28
  •  2018.3.222-GCC-7.3.0-2.30
  •  2019.1.144-GCC-8.2.0-2.31.1


Intel C, C++ & Fortran compilers

  •  2019.5.281
  •  2020.1.217


Fortran compiler from Intel

  •  2016.1.150-GCC-4.9.3-2.25
  •  2016.2.181-GCC-4.9.3-2.25
  •  2017.1.132-GCC-6.3.0-2.27
  •  2017.4.196-GCC-6.4.0-2.28
  •  2018.1.163-GCC-6.4.0-2.28
  •  2018.3.222-GCC-7.3.0-2.30
  •  2019.1.144-GCC-8.2.0-2.31.1


The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.

  •  4.0.0-foss-2017a
  •  4.0.0-foss-2018b
  •  5.0.0-foss-2017b
  •  5.0.1-GCCcore-6.4.0
  •  6.0.0-GCCcore-7.3.0
  •  7.0.1-GCCcore-8.2.0
  •  7.0.1-GCCcore-8.3.0
  •  9.0.1-GCCcore-9.3.0


C, C++ and Fortran compilers from The Portland Group - PGI

  •  19.10-GCC-8.3.0-2.32

Data management & processing tools


GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.

  •  2.2.3-foss-2018b-Python-3.6.6
  •  2.2.3-intel-2018b-Python-3.6.6


HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.

  •  2.7.1-intel-2018a-Python-3.6.4
  •  2.8.0-foss-2018b-Python-3.6.6
  •  2.9.0-foss-2019a


HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.

  •  1.8.17-foss-2018b
  •  1.10.1-intel-2017b
  •  1.10.1-foss-2017b
  •  1.10.1-intel-2018a
  •  1.10.2-foss-2018b
  •  1.10.2-intel-2018b
  •  1.10.5-gompi-2019a
  •  1.10.5-iimpi-2019a
  •  1.10.5-iimpi-2019b


LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.

  •  3.100-GCCcore-6.4.0
  •  3.100-GCCcore-7.3.0
  •  3.100-GCCcore-8.2.0


NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.

  •  4.5.0-foss-2017b
  •  4.5.0-intel-2017b
  •  4.6.1-foss-2018b
  •  4.6.1-intel-2018b
  •  4.6.2-gompi-2019a


NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.

  •  4.4.4-intel-2017b


This is a Perl extension interface to James Clark's XML parser, expat.

  •  2.44_01-GCCcore-6.3.0-Perl-5.24.1
  •  2.44_01-GCCcore-6.4.0-Perl-5.26.0
  •  2.44_01-GCCcore-6.4.0-Perl-5.26.1
  •  2.44_01-GCCcore-7.3.0-Perl-5.24.1
  •  2.44_01-GCCcore-7.3.0-Perl-5.28.0



Valgrind: Debugging and profiling tools

  •  3.13.0-intel-2018a

Development tools


Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.

  •  1.10.5-Java-1.8


Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.

  •  2.69-GCCcore-6.3.0
  •  2.69-GCCcore-6.4.0
  •  2.69-GCCcore-7.3.0
  •  2.69-GCCcore-8.2.0
  •  2.69-GCCcore-8.3.0
  •  2.69-GCCcore-9.3.0
  •  2.69-foss-2018b
  •  2.69


Automake: GNU Standards-compliant Makefile generator

  •  1.15-GCCcore-6.3.0
  •  1.15-GCCcore-7.3.0
  •  1.15-foss-2018b
  •  1.15
  •  1.15.1-GCCcore-6.4.0
  •  1.16.1-GCCcore-7.3.0
  •  1.16.1-GCCcore-8.2.0
  •  1.16.1-GCCcore-8.3.0
  •  1.16.1-GCCcore-9.3.0


This bundle collect the standard GNU build tools: Autoconf, Automake and libtool

  •  20150215-GCCcore-6.3.0
  •  20150215-GCCcore-7.3.0
  •  20150215-foss-2018b
  •  20150215
  •  20170619-GCCcore-6.4.0
  •  20180311-GCCcore-7.3.0
  •  20180311-GCCcore-8.2.0
  •  20180311-GCCcore-8.3.0
  •  20180311-GCCcore-9.3.0


Bazel is a build tool that builds code quickly and reliably. It is used to build the majority of Google's software.

  •  0.11.1-GCCcore-6.4.0
  •  0.18.0-GCCcore-7.3.0
  •  0.20.0-GCCcore-8.2.0


Boost provides free peer-reviewed portable C++ source libraries.

  •  1.66.0-intel-2018a
  •  1.67.0-foss-2018b
  •  1.70.0-iimpi-2019a
  •  1.70.0-gompi-2019a


CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.

  •  3.5.2-intel-2016a
  •  3.7.2-GCCcore-6.3.0
  •  3.7.2-GCCcore-6.4.0
  •  3.7.2-GCCcore-7.3.0
  •  3.9.1-GCCcore-6.4.0
  •  3.9.4-GCCcore-6.4.0
  •  3.9.5-GCCcore-6.4.0
  •  3.10.2-GCCcore-6.4.0
  •  3.11.1-GCCcore-6.4.0
  •  3.11.4-GCCcore-7.3.0
  •  3.12.1-GCCcore-7.2.0
  •  3.12.1-GCCcore-7.3.0
  •  3.13.3-GCCcore-8.2.0
  •  3.13.3-GCCcore-8.3.0
  •  3.15.3-GCCcore-8.3.0
  •  3.16.4-GCCcore-9.3.0


D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed.

  •  1.13.6-GCCcore-7.3.0
  •  1.13.12-GCCcore-9.3.0


Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.

  •  1.8.13-GCCcore-6.4.0
  •  1.8.14-GCCcore-7.3.0
  •  1.8.15-GCCcore-8.2.0


GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.

  •  1.54.1-intel-2018a-Python-2.7.14
  •  1.54.1-foss-2018b-Python-2.7.15


GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.

  •  3.1-GCCcore-6.4.0
  •  3.1-GCCcore-7.3.0
  •  3.1-GCCcore-8.2.0
  •  3.1-GCCcore-8.3.0
  •  3.1-GCCcore-9.3.0


intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.

  •  0.51.0-GCCcore-6.3.0-Perl-5.24.1
  •  0.51.0-GCCcore-6.4.0-Perl-5.26.0
  •  0.51.0-GCCcore-6.4.0-Perl-5.26.1
  •  0.51.0-GCCcore-7.3.0-Perl-5.24.1
  •  0.51.0-GCCcore-7.3.0-Perl-5.28.0
  •  0.51.0-GCCcore-8.2.0
  •  0.51.0-GCCcore-8.3.0
  •  0.51.0-GCCcore-9.3.0


GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.

  •  1.4.17-GCCcore-4.9.3
  •  1.4.17-GCCcore-4.9.4
  •  1.4.17-foss-2018b
  •  1.4.17
  •  1.4.18-GCCcore-6.3.0
  •  1.4.18-GCCcore-6.4.0
  •  1.4.18-GCCcore-7.2.0
  •  1.4.18-GCCcore-7.3.0
  •  1.4.18-GCCcore-8.2.0
  •  1.4.18-GCCcore-8.3.0
  •  1.4.18-GCCcore-9.3.0
  •  1.4.18


A super-fast templating language that borrows the best ideas from the existing templating languages

  •  1.0.6-foss-2017a-Python-2.7.13
  •  1.0.6-foss-2018b-Python-2.7.13
  •  1.0.7-foss-2017b-Python-2.7.14
  •  1.0.7-intel-2018a-Python-2.7.14
  •  1.0.7-foss-2018b-Python-2.7.15
  •  1.0.7-intel-2018b-Python-2.7.15
  •  1.0.8-GCCcore-8.2.0
  •  1.0.8-GCCcore-8.3.0
  •  1.1.2-GCCcore-9.3.0


The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.

  •  6.0-GCCcore-6.3.0
  •  6.0-GCCcore-6.4.0
  •  6.0-GCCcore-7.3.0
  •  6.0-intel-2016a
  •  6.0
  •  6.1-GCCcore-6.4.0
  •  6.1-GCCcore-7.2.0
  •  6.1-GCCcore-7.3.0
  •  6.1-GCCcore-8.2.0
  •  6.1-GCCcore-8.3.0
  •  6.1
  •  6.2-GCCcore-9.3.0


The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.

  •  8.40-GCCcore-6.3.0
  •  8.41-GCCcore-6.4.0
  •  8.41-GCCcore-7.3.0
  •  8.43-GCCcore-8.3.0
  •  8.44-GCCcore-9.3.0


The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.

  •  10.34-GCCcore-9.3.0


pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries).

  •  0.29.1-GCCcore-6.3.0
  •  0.29.1-GCCcore-7.3.0
  •  0.29.1-foss-2017a
  •  0.29.1-foss-2018b
  •  0.29.2-GCCcore-6.3.0
  •  0.29.2-GCCcore-6.4.0
  •  0.29.2-GCCcore-7.3.0
  •  0.29.2-GCCcore-8.2.0
  •  0.29.2-GCCcore-8.3.0
  •  0.29.2-GCCcore-9.3.0


pkgconfig is a Python module to interface with the pkg-config command line tool

  •  1.3.1-intel-2018a-Python-3.6.4
  •  1.3.1-foss-2018b-Python-3.6.6
  •  1.5.1-GCCcore-8.2.0-python


Google Protocol Buffers

  •  3.6.1-GCCcore-7.3.0


Qt is a comprehensive cross-platform C++ application framework.

  •  4.8.7-foss-2017a
  •  4.8.7-intel-2018a


Qt is a comprehensive cross-platform C++ application framework.

  •  5.10.1-intel-2018a
  •  5.10.1-foss-2018b
  •  5.14.1-GCCcore-9.3.0


SQLite: SQL Database Engine in a C Library

  •  3.17.0-GCCcore-6.3.0
  •  3.17.0-GCCcore-7.3.0
  •  3.20.1-GCCcore-6.4.0
  •  3.21.0-GCCcore-6.4.0
  •  3.24.0-GCCcore-7.3.0
  •  3.27.2-GCCcore-8.2.0
  •  3.27.2-GCCcore-8.3.0
  •  3.29.0-GCCcore-8.3.0
  •  3.31.1-GCCcore-9.3.0


SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.

  •  3.0.12-foss-2018b-Python-3.6.6
  •  3.0.12-intel-2018b-Python-3.6.6


Texinfo is the official documentation format of the GNU project.

  •  6.5-GCCcore-7.3.0

xorg-macros macros utilities.

  •  1.19.1-GCCcore-6.4.0
  •  1.19.2-GCCcore-7.3.0
  •  1.19.2-GCCcore-8.2.0
  •  1.19.2-GCCcore-8.3.0
  •  1.19.2-GCCcore-9.3.0


ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.

  •  4.3.2-GCCcore-8.2.0

Earth Sciences


The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs.


Languages and programming aids


Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

  •  3.0.4-GCCcore-4.9.3
  •  3.0.4-GCCcore-4.9.4
  •  3.0.4-GCCcore-6.3.0
  •  3.0.4-GCCcore-6.4.0
  •  3.0.4-GCCcore-7.2.0
  •  3.0.4-GCCcore-7.3.0
  •  3.0.4
  •  3.0.5-GCCcore-6.4.0
  •  3.0.5-GCCcore-7.2.0
  •  3.0.5-GCCcore-7.3.0
  •  3.0.5-GCCcore-8.2.0
  •  3.0.5-GCCcore-8.3.0
  •  3.0.5
  •  3.3.2-GCCcore-8.3.0
  •  3.3.2
  •  3.5.3-GCCcore-9.3.0
  •  3.5.3


Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.

  •  2.5.39-GCCcore-4.9.3
  •  2.5.39
  •  2.6.0-GCCcore-4.9.4
  •  2.6.0
  •  2.6.3-GCCcore-6.3.0
  •  2.6.3-GCCcore-7.3.0
  •  2.6.3
  •  2.6.4-GCCcore-6.4.0
  •  2.6.4-GCCcore-7.2.0
  •  2.6.4-GCCcore-7.3.0
  •  2.6.4-GCCcore-8.2.0
  •  2.6.4-GCCcore-8.3.0
  •  2.6.4-GCCcore-9.3.0
  •  2.6.4


The Free Implementation of the Unicode Bidirectional Algorithm.

  •  1.0.2-GCCcore-6.4.0
  •  1.0.5-GCCcore-7.3.0
  •  1.0.5-GCCcore-8.2.0


Guile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with plug-ins, modules, or scripts.

  •  1.8.8-GCCcore-8.2.0
  •  2.0.11-foss-2018b


The OpenCL™ platform is the open standard for general-purpose parallel programming of heterogeneous systems. It provides a uniform programming environment that's used to write portable code for client PCs, high-performance computing servers, and embedded systems



Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.

  •  1.8.0_121
  •  1.8.0_162
  •  1.8.0_212
  •  11.0.2


Julia is a high-level, high-performance dynamic programming language for numerical computing

  •  1.1.1-linux-x86_64


NASM: General-purpose x86 assembler

  •  2.13.01-GCCcore-6.4.0
  •  2.13.03-GCCcore-6.4.0
  •  2.13.03-GCCcore-7.3.0
  •  2.14.02-GCCcore-8.2.0
  •  2.14.02-GCCcore-8.3.0
  •  2.14.02-GCCcore-9.3.0


Larry Wall's Practical Extraction and Report Language

  •  5.24.1-GCCcore-6.3.0
  •  5.24.1-GCCcore-7.3.0
  •  5.26.0-GCCcore-6.4.0
  •  5.26.1-GCCcore-6.4.0
  •  5.28.0-GCCcore-7.3.0
  •  5.28.1-GCCcore-8.2.0
  •  5.30.0-GCCcore-8.3.0
  •  5.30.2-GCCcore-9.3.0


Python is a programming language that lets you work more quickly and integrate your systems more effectively.

  •  2.7.13-foss-2017a
  •  2.7.13-foss-2018b
  •  2.7.14-GCCcore-6.4.0-bare
  •  2.7.14-foss-2017b
  •  2.7.14-intel-2018a
  •  2.7.15-GCCcore-7.3.0-bare
  •  2.7.15-GCCcore-8.2.0
  •  2.7.15-GCCcore-8.3.0
  •  2.7.15-foss-2018b
  •  2.7.15-intel-2018b
  •  2.7.18-GCCcore-9.3.0
  •  3.6.4-intel-2018a
  •  3.6.6-intel-2018b
  •  3.6.6-foss-2018b
  •  3.7.2-GCCcore-8.2.0
  •  3.7.2-GCCcore-8.3.0
  •  3.7.4-GCCcore-8.3.0
  •  3.8.2-GCCcore-9.3.0

R is a free software environment for statistical computing and graphics.

  •  3.5.1-foss-2018b
  •  3.5.1-intel-2018b
  •  3.6.0-intel-2019b


Bundle of Python packages for scientific software

  •  2019.03-foss-2019a


Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.

  •  8.6.6-GCCcore-6.3.0
  •  8.6.6-GCCcore-7.3.0
  •  8.6.7-GCCcore-6.4.0
  •  8.6.8-GCCcore-6.4.0
  •  8.6.8-GCCcore-7.3.0
  •  8.6.9-GCCcore-8.2.0
  •  8.6.9-GCCcore-8.3.0
  •  8.6.10-GCCcore-9.3.0


Tkinter module, built with the Python buildsystem

  •  2.7.15-intel-2018b-Python-2.7.15


Yasm: Complete rewrite of the NASM assembler with BSD license

  •  1.3.0-GCCcore-6.4.0
  •  1.3.0-GCCcore-7.3.0
  •  1.3.0-GCCcore-8.2.0

General purpose libraries


ACTC converts independent triangles into triangle strips or fans.

  •  1.1-GCCcore-6.4.0


Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles.

  •  3.1.5-GCCcore-9.3.0


freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library.

  •  3.0.0-intel-2018a
  •  3.0.0-foss-2018b


The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new.

  •  7.4.4-foss-2018b
  •  7.6.10-GCCcore-8.2.0


ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.

  •  61.1-GCCcore-7.3.0
  •  64.2-GCCcore-8.3.0


Direct Rendering Manager runtime library.

  •  2.4.76-GCCcore-6.3.0
  •  2.4.88-GCCcore-6.4.0
  •  2.4.91-GCCcore-6.4.0
  •  2.4.92-GCCcore-7.3.0
  •  2.4.97-GCCcore-8.2.0
  •  2.4.97-GCCcore-8.3.0
  •  2.4.100-GCCcore-9.3.0


The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.

  •  2.1.11-GCCcore-9.3.0


Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.

  •  1.11.0-GCCcore-9.3.0


The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.

  •  3.2.1-GCCcore-6.3.0
  •  3.2.1-GCCcore-6.4.0
  •  3.2.1-GCCcore-7.3.0
  •  3.2.1-GCCcore-8.2.0
  •  3.2.1-GCCcore-8.3.0
  •  3.2.1-foss-2018b
  •  3.3-GCCcore-9.3.0


GD is an open source code library for the dynamic creation of images by programmers.

  •  2.2.5-GCCcore-7.3.0
  •  2.2.5-intel-2018a


Library for reading and writing coordinate system information from/to GeoTIFF files

  •  1.4.2-foss-2018b
  •  1.4.2-intel-2018b


libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.

  •  1.2.0-GCCcore-9.3.0


libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.

  •  1.5.2-GCCcore-6.4.0
  •  1.5.3-GCCcore-6.4.0
  •  2.0.0-GCCcore-7.3.0
  •  2.0.2-GCCcore-8.2.0
  •  2.0.2-GCCcore-8.3.0
  •  2.0.4-GCCcore-9.3.0


GNU libmatheval is a library (callable from C and Fortran) to parse and evaluate symbolic expressions input as text.

  •  1.1.11-GCCcore-8.2.0


libpng is the official PNG reference library

  •  1.6.29-GCCcore-6.3.0
  •  1.6.29-GCCcore-7.3.0
  •  1.6.32-GCCcore-6.4.0
  •  1.6.34-GCCcore-6.4.0
  •  1.6.34-GCCcore-7.3.0
  •  1.6.36-GCCcore-8.2.0
  •  1.6.36-GCCcore-8.3.0
  •  1.6.37-GCCcore-8.3.0
  •  1.6.37-GCCcore-9.3.0


The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.

  •  7.0-GCCcore-6.3.0
  •  7.0-GCCcore-6.4.0
  •  7.0-GCCcore-7.3.0
  •  8.0-GCCcore-8.2.0
  •  8.0-GCCcore-8.3.0
  •  8.0-GCCcore-9.3.0


Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.

  •  1.0.28-GCCcore-7.3.0
  •  1.0.28-GCCcore-8.3.0


Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.

  •  1.0.17-GCCcore-8.2.0


tiff: Library and tools for reading and writing TIFF data files

  •  4.0.9-GCCcore-6.4.0
  •  4.0.9-GCCcore-7.3.0
  •  4.0.9-intel-2018b
  •  4.0.10-GCCcore-8.3.0
  •  4.1.0-GCCcore-9.3.0


GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.

  •  2.4.6-GCCcore-6.3.0
  •  2.4.6-GCCcore-6.4.0
  •  2.4.6-GCCcore-7.3.0
  •  2.4.6-GCCcore-8.2.0
  •  2.4.6-GCCcore-8.3.0
  •  2.4.6-GCCcore-9.3.0
  •  2.4.6-foss-2018b
  •  2.4.6


This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.

  •  0.9.3-foss-2018b
  •  0.9.10-GCCcore-8.2.0


The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications

  •  1.2.1-GCCcore-7.3.0
  •  1.3.1-GCCcore-8.2.0
  •  1.3.1-GCCcore-8.3.0
  •  1.3.1-GCCcore-9.3.0


Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).

  •  2.9.4-GCCcore-6.3.0
  •  2.9.4-GCCcore-6.4.0
  •  2.9.4-GCCcore-7.3.0
  •  2.9.7-GCCcore-6.4.0
  •  2.9.8-GCCcore-7.3.0
  •  2.9.8-GCCcore-8.2.0
  •  2.9.8-GCCcore-8.3.0
  •  2.9.9-GCCcore-8.3.0
  •  2.9.10-GCCcore-9.3.0


LibYAML is a YAML parser and emitter written in C.

  •  0.1.7-GCCcore-6.4.0
  •  0.2.1-GCCcore-7.3.0


LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.

  •  1.9.2-GCCcore-9.3.0


Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.

  •  3.3-GCCcore-6.3.0
  •  3.3-GCCcore-6.4.0
  •  3.3-GCCcore-7.3.0
  •  3.4-intel-2018a
  •  3.4-foss-2018b
  •  3.4-intel-2018b
  •  3.4.1-GCCcore-8.2.0
  •  3.4.1-GCCcore-8.3.0


Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.

  •  4.20-GCCcore-7.3.0
  •  4.25-GCCcore-9.3.0


Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.

  •  3.39-GCCcore-7.3.0
  •  3.51-GCCcore-9.3.0


Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability.

  •  3.1.5-GCCcore-9.3.0


Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates

  •  5.0.0-foss-2018b
  •  5.0.0-intel-2018b


PyYAML is a YAML parser and emitter for the Python programming language.

  •  3.12-intel-2018a-Python-3.6.4
  •  3.13-foss-2018b-Python-3.6.6


SDL: Simple DirectMedia Layer, a cross-platform multimedia library

  •  2.0.9-intel-2018b


Snappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.

  •  1.1.8-GCCcore-9.3.0


An open-source software library for Machine Intelligence

  •  1.8.0-intel-2018a-Python-3.6.4
  •  1.12.0-foss-2018b-Python-3.6.6
  •  1.13.1-foss-2019a-Python-3.7.2


Unified Communication X An open-source production grade communication framework for data centric and high-performance applications

  •  1.8.0-GCCcore-9.3.0


zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.

  •  1.2.8-GCCcore-4.9.3
  •  1.2.8-GCCcore-4.9.4
  •  1.2.8-foss-2018b
  •  1.2.8
  •  1.2.11-GCCcore-6.3.0
  •  1.2.11-GCCcore-6.4.0
  •  1.2.11-GCCcore-7.2.0
  •  1.2.11-GCCcore-7.3.0
  •  1.2.11-GCCcore-8.2.0
  •  1.2.11-GCCcore-8.3.0
  •  1.2.11-GCCcore-9.3.0
  •  1.2.11


Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.

  •  1.4.4-GCCcore-9.3.0

High-level mathematical software


Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.

  •  3.3.4
  •  3.3.7-GCCcore-7.3.0
  •  3.3.7-GCCcore-9.3.0
  •  3.3.7


Eigenvalue SoLvers for Petaflop-Applications .

  •  2016.11.001.pre-intel-2018b
  •  2018.11.001-intel-2019a


FreeFem++ is a partial differential equation solver. It has its own language. freefem scripts can solve multiphysics non linear systems in 2D and 3D.

  •  3.61-1-intel-2018a
  •  4.1-intel-2018a-downloaded-deps
  •  4.4.2-foss-2018b-downloaded-deps


GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)

  •  3.6.2-foss-2018b-Python-3.6.6
  •  3.6.2-intel-2018b-Python-3.6.6


GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.

  •  6.1.0-foss-2018b
  •  6.1.2-GCCcore-6.3.0
  •  6.1.2-GCCcore-6.4.0
  •  6.1.2-GCCcore-7.3.0
  •  6.1.2-GCCcore-8.2.0
  •  6.1.2-GCCcore-8.3.0
  •  6.2.0-GCCcore-9.3.0


Harminv is a free program (and accompanying library) to solve the problem of harmonic inversion - given a discrete-time, finite-length signal that consists of a sum of finitely-many sinusoids (possibly exponentially decaying) in a given bandwidth, it determines the frequencies, decay constants, amplitudes, and phases of those sinusoids.

  •  1.4-foss-2018b


Keras is a minimalist, highly modular neural networks library, written in Python and capable of running on top of either TensorFlow or Theano.

  •  2.2.4-intel-2018a-Python-3.6.4
  •  2.2.4-foss-2018b-Python-3.6.6


libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.

  •  1.5-GCCcore-6.4.0
  •  1.7-GCCcore-7.3.0


MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran.

  •  2017a
  •  2018b
  •  2019b
  •  2020a


METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.

  •  5.1.0-GCCcore-6.4.0
  •  5.1.0-GCCcore-8.2.0
  •  5.1.0-foss-2018b


The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.

  •  4.0.1-GCCcore-6.4.0
  •  4.0.1-GCCcore-7.3.0


ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.

  •  4.0.3-intel-2018a
  •  4.0.3-iimpi-2019a
  •  4.0.3-gompi-2019a


Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.

  •  6.0.6-intel-2018a
  •  6.0.6-foss-2018b
  •  6.0.6-iimpi-2019a
  •  6.0.6-gompi-2019a


Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently.

  •  1.0.2-intel-2018a-Python-3.6.4
  •  1.0.3-foss-2018b-Python-3.6.6

MPI stacks


Intel MPI Library, compatible with MPICH ABI

  •  2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27
  •  2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28
  •  2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28
  •  2018.3.222-iccifort-2018.3.222-GCC-7.3.0-2.30
  •  2018.4.274-iccifort-2019.1.144-GCC-8.2.0-2.31.1
  •  2018.5.288-iccifort-2019.5.281
  •  2019.7.217-iccifort-2020.1.217


The Open MPI Project is an open source MPI-3 implementation.

  •  2.0.2-GCC-6.3.0-2.27
  •  2.1.1-GCC-6.4.0-2.28
  •  2.1.2-GCC-6.4.0-2.28
  •  3.1.1-GCC-7.3.0-2.30
  •  3.1.1-iccifort-2018.3.222-GCC-7.3.0-2.30
  •  3.1.3-GCC-8.2.0-2.31.1
  •  3.1.3-iccifort-2019.1.144-GCC-8.2.0-2.31.1
  •  3.1.4-GCC-8.3.0
  •  4.0.3-GCC-9.3.0

Numerical Libraries


The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.

  •  4.11.1-intel-2018a-Python-2.7.14
  •  4.11.1-foss-2018b-Python-2.7.15


FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.

  •  3.3.6-gompi-2017a
  •  3.3.6-gompi-2017b
  •  3.3.6-intel-2017b
  •  3.3.8-gompi-2018b
  •  3.3.8-intel-2018b
  •  3.3.8-gompi-2019a
  •  3.3.8-intel-2019b
  •  3.3.8-gompi-2020a


The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.

  •  2.1-foss-2018b
  •  2.4-GCCcore-6.4.0
  •  2.5-GCC-7.3.0-2.30
  •  2.5-GCC-8.2.0-2.31.1
  •  2.5-iccifort-2018.3.222-GCC-7.3.0-2.30
  •  2.5-iccifort-2019.5.281


Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.

  •  2.14.0-intel-2018a
  •  2.15.1-intel-2019a
  •  2.15.1-foss-2019a


Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.

  •  2017.1.132-iimpi-2017a
  •  2017.3.196-iimpi-2017b
  •  2018.1.163-iimpi-2018a
  •  2018.3.222-iimpi-2018b
  •  2019.1.144-iimpi-2019a
  •  2019.1.144-iompi-2019.01
  •  2019.5.281-iimpi-2019b
  •  2020.1.217-iimpi-2020a


NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.

  •  2.4.2-GCCcore-7.3.0
  •  2.6.1-GCCcore-8.3.0


OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.

  •  0.2.19-GCC-6.3.0-2.27-LAPACK-3.7.0
  •  0.2.20-GCC-6.4.0-2.28
  •  0.3.1-GCC-7.3.0-2.30
  •  0.3.5-GCC-8.2.0-2.31.1
  •  0.3.9-GCC-9.3.0


PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.

  •  3.9.3-intel-2018a
  •  3.11.1-intel-2019a
  •  3.11.1-foss-2019a


The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.

  •  2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.7.0
  •  2.0.2-gompi-2017b-OpenBLAS-0.2.20
  •  2.0.2-gompi-2018b-OpenBLAS-0.3.1
  •  2.0.2-gompi-2019a-OpenBLAS-0.3.5
  •  2.1.0-gompi-2020a


SuiteSparse is a collection of libraries manipulate sparse matrices.

  •  5.1.2-intel-2018a-METIS-5.1.0
  •  5.1.2-foss-2018b-METIS-5.1.0
  •  5.4.0-foss-2019a-METIS-5.1.0
  •  5.4.0-intel-2019a-METIS-5.1.0


A Quality Tetrahedral Mesh Generator and a 3D Delaunay Triangulator

  •  1.5.0-GCCcore-6.4.0

Performance tools


Vectorization Optimization and Thread Prototyping - Vectorize & thread code or performance “dies” - Easy workflow + data + tips = faster code faster - Prioritize, Prototype & Predict performance gain

  •  2019_update5

Physics and physical systems simulations


Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems.

  •  1.3-foss-2018b


UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.

  •  2.2.26-GCCcore-8.3.0
  •  2.2.26-foss-2018b
  •  2.2.26-intel-2018b


The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from first principles.

  •  5.3.5.MN-VFM_2017-A-intel-2018b
  •  5.3.5-intel-2018b
  •  5.4.4-intel-2016.02-GCC-4.9
  •  6.1.2-intel-2019b_openmp
  •  6.1.2-intel-2019b

System utilities (e.g. highly depending on system OS and hardware)


The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.

  •  1.11.5-GCC-6.3.0-2.27
  •  1.11.7-GCCcore-6.4.0
  •  1.11.8-GCCcore-6.4.0
  •  1.11.8-intel-2017a
  •  1.11.10-GCCcore-7.3.0
  •  1.11.11-GCCcore-8.2.0
  •  1.11.12-GCCcore-8.3.0
  •  2.2.0-GCCcore-9.3.0


Generic PCI access library.

  •  0.14-GCCcore-6.4.0
  •  0.14-GCCcore-7.3.0
  •  0.14-GCCcore-8.2.0
  •  0.14-GCCcore-8.3.0
  •  0.16-GCCcore-9.3.0


OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility.

  •  5.2.122-GCCcore-8.2.0

EasyBuild toolchains


GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.

  •  2017a
  •  2017b
  •  2018b
  •  2019a
  •  2020a


GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.

  •  2017a
  •  2017b
  •  2018b
  •  2019a
  •  2019b
  •  2020a


Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and Intel MKL

  •  2016.1.150-GCC-4.9.3-2.25
  •  2016.2.181-GCC-4.9.3-2.25
  •  2017.1.132-GCC-6.3.0-2.27
  •  2017.4.196-GCC-6.4.0-2.28
  •  2018.1.163-GCC-6.4.0-2.28
  •  2018.3.222-GCC-7.3.0-2.30
  •  2019.1.144-GCC-8.2.0-2.31.1


Intel C/C++ and Fortran compilers, alongside Intel MPI.

  •  8.1.5-GCC-4.9.3-2.25
  •  2016.02-GCC-4.9.3-2.25
  •  2017a
  •  2017b
  •  2018a
  •  2018b
  •  2019a
  •  2019b
  •  2020a


Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).

  •  2016a
  •  2016.02-GCC-4.9
  •  2017a
  •  2017b
  •  2018a
  •  2018b
  •  2019a
  •  2019b
  •  2020a


Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.

  •  2019.01


Intel C/C++ and Fortran compilers, alongside Open MPI.

  •  2019.01

General purpose tools


binutils: GNU binary utilities

  •  2.25-GCCcore-4.9.3
  •  2.25-GCCcore-4.9.4
  •  2.25
  •  2.27-GCCcore-6.3.0
  •  2.27
  •  2.28-GCCcore-6.4.0
  •  2.28
  •  2.29-GCCcore-7.2.0
  •  2.29
  •  2.30-GCCcore-7.3.0
  •  2.30
  •  2.31.1-GCCcore-8.2.0
  •  2.31.1
  •  2.32-GCCcore-8.3.0
  •  2.32
  •  2.34-GCCcore-9.3.0
  •  2.34


bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

  •  1.0.6-GCCcore-6.3.0
  •  1.0.6-GCCcore-6.4.0
  •  1.0.6-GCCcore-7.2.0
  •  1.0.6-GCCcore-7.3.0
  •  1.0.6-GCCcore-8.2.0
  •  1.0.6-GCCcore-8.3.0
  •  1.0.8-GCCcore-8.3.0
  •  1.0.8-GCCcore-9.3.0


libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.

  •  7.55.1-GCCcore-6.4.0
  •  7.56.0-GCCcore-6.4.0
  •  7.56.1-GCCcore-6.4.0
  •  7.60.0-GCCcore-7.2.0
  •  7.60.0-GCCcore-7.3.0
  •  7.63.0-GCCcore-8.2.0
  •  7.63.0-GCCcore-8.3.0
  •  7.66.0-GCCcore-8.3.0
  •  7.69.1-GCCcore-9.3.0


Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags)

  •  2.2.0-GCCcore-6.3.0
  •  2.2.0-GCCcore-7.3.0
  •  2.2.4-GCCcore-6.4.0
  •  2.2.5-GCCcore-6.4.0
  •  2.2.5-GCCcore-7.3.0
  •  2.2.6-GCCcore-8.2.0
  •  2.2.6-GCCcore-8.3.0
  •  2.2.7-GCCcore-8.3.0
  •  2.2.9-GCCcore-9.3.0


GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation

  •  0.20.1-GCCcore-9.3.0
  •  0.20.1


Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.

  •  9.22-GCCcore-6.4.0
  •  9.27-GCCcore-8.3.0


gzip (GNU zip) is a popular data compression program as a replacement for compress

  •  1.10-GCCcore-8.2.0
  •  1.10-GCCcore-9.3.0


help2man produces simple manual pages from the '--help' and '--version' output of other commands.

  •  1.47.4-GCCcore-6.3.0
  •  1.47.4-GCCcore-6.4.0
  •  1.47.4-GCCcore-7.2.0
  •  1.47.4-GCCcore-7.3.0
  •  1.47.4
  •  1.47.7-GCCcore-8.2.0
  •  1.47.8-GCCcore-8.3.0
  •  1.47.12-GCCcore-9.3.0


HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.

  •  2.3-intel-2019a
  •  2.3-iomkl-2019.01
  •  2.3-intel-2020a


Intel Inspector XE is an easy to use memory error checker and thread checker for serial and parallel applications

  •  2019_update5


The Intel Trace Collector is a low-overhead tracing library that performs event-based tracing in applications. The Intel Trace Analyzer provides a convenient way to monitor application activities gathered by the Intel Trace Collector through graphical displays.

  •  2019.2.026


Meson is a cross-platform build system designed to be both as fast and as user friendly as possible.

  •  0.50.0-GCCcore-8.2.0-Python-3.7.2
  •  0.50.0-GCCcore-8.3.0-Python-3.7.2
  •  0.55.1-GCCcore-9.3.0-Python-3.8.2


Ninja is a small build system with a focus on speed.

  •  1.9.0-GCCcore-8.2.0
  •  1.9.0-GCCcore-8.3.0
  •  1.9.0-foss-2018b
  •  1.10.0-GCCcore-9.3.0


The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.

  •  2.0.11-GCCcore-6.3.0
  •  2.0.11-GCC-6.3.0-2.27
  •  2.0.11-GCCcore-6.4.0
  •  2.0.11-GCCcore-7.3.0
  •  2.0.12-GCCcore-8.2.0
  •  2.0.12-GCCcore-8.3.0
  •  2.0.13-GCCcore-9.3.0


re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.

  •  1.3-GCCcore-9.3.0


Szip compression software, providing lossless compression of scientific data

  •  2.1-foss-2018b
  •  2.1.1-GCCcore-6.4.0
  •  2.1.1-GCCcore-7.3.0
  •  2.1.1-GCCcore-8.2.0
  •  2.1.1-GCCcore-8.3.0


Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.

  •  6.20.00-GCCcore-6.4.0


UnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality.

  •  6.0-GCCcore-9.3.0


Set of Linux utilities

  •  2.29.2-GCCcore-6.3.0
  •  2.31-GCCcore-6.4.0
  •  2.31.1-GCCcore-6.4.0
  •  2.32-GCCcore-7.3.0
  •  2.33-GCCcore-8.2.0
  •  2.33-GCCcore-8.3.0
  •  2.34-GCCcore-8.3.0
  •  2.35-GCCcore-9.3.0


Intel VTune Amplifier XE is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java.

  •  2019_update5


A built-package format for Python.

  •  0.30.0-intel-2018a-Python-3.6.4
  •  0.31.1-foss-2018b-Python-3.6.6


xz: XZ utilities

  •  5.2.3-GCCcore-6.3.0
  •  5.2.3-GCCcore-6.4.0
  •  5.2.3-GCCcore-7.3.0
  •  5.2.4-GCCcore-7.3.0
  •  5.2.4-GCCcore-8.2.0
  •  5.2.4-GCCcore-8.3.0
  •  5.2.5-GCCcore-9.3.0

Visualization, plotting, documentation and typesetting


ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

  •  2.28.1-foss-2018b


Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB

  •  1.14.10-GCCcore-6.4.0
  •  1.14.12-GCCcore-6.4.0
  •  1.14.12-GCCcore-7.3.0
  •  1.16.0-GCCcore-8.3.0


A complete, cross-platform solution to record, convert and stream audio and video.

  •  3.4-GCCcore-6.4.0
  •  4.1-foss-2018b
  •  4.1.3-GCCcore-8.2.0


FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.

  •  1.3.4-foss-2017b


Fontconfig is a library designed to provide system-wide font configuration, customization and application access.

  •  2.12.1-GCCcore-6.3.0-libpng-1.6.29
  •  2.12.1-GCCcore-7.3.0-libpng-1.6.29
  •  2.12.4-GCCcore-6.4.0
  •  2.12.6-GCCcore-6.4.0
  •  2.13.0-GCCcore-7.3.0
  •  2.13.1-GCCcore-8.2.0
  •  2.13.1-GCCcore-8.3.0
  •  2.13.92-GCCcore-9.3.0


FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.

  •  2.7.1-GCCcore-6.3.0-libpng-1.6.29
  •  2.7.1-GCCcore-7.3.0-libpng-1.6.29
  •  2.8-GCCcore-6.4.0
  •  2.9-GCCcore-6.4.0
  •  2.9.1-GCCcore-7.3.0
  •  2.9.1-GCCcore-8.2.0
  •  2.9.1-GCCcore-8.3.0
  •  2.10.1-GCCcore-8.3.0
  •  2.10.1-GCCcore-9.3.0


The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.

  •  2.36.12-foss-2018b


GLib is one of the base libraries of the GTK+ project

  •  2.52.0-foss-2017a
  •  2.53.5-GCCcore-6.4.0
  •  2.54.3-GCCcore-6.4.0
  •  2.54.3-GCCcore-7.3.0
  •  2.60.1-GCCcore-8.3.0
  •  2.64.1-GCCcore-9.3.0


Portable interactive, function plotting utility

  •  5.2.2-intel-2018a
  •  5.2.6-foss-2018b


The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications.

  •  2.24.32-foss-2018b


HarfBuzz is an OpenType text shaping engine.

  •  1.7.5-intel-2018a
  •  2.2.0-foss-2018b


ImageMagick is a software suite to create, edit, compose, or convert bitmap images

  •  7.0.7-15-GCCcore-6.4.0
  •  7.0.8-46-GCCcore-8.3.0


The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.

  •  2.0.12-GCCcore-6.4.0
  •  2.0.12-intel-2017b
  •  2.0.14-GCCcore-6.4.0
  •  2.0.14-GCCcore-7.3.0
  •  2.0.14-GCCcore-8.3.0
  •  2.0.14-GCCcore-9.3.0


The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.

  •  9.0.0-GCCcore-8.2.0
  •  9.0.0-GCCcore-8.3.0
  •  9.0.0-foss-2017a
  •  9.0.0-foss-2017b
  •  9.0.0-intel-2018a
  •  9.0.0-foss-2018b
  •  9.0.0-intel-2018b
  •  9.0.1-GCCcore-9.3.0


Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.

  •  2.8-GCCcore-6.4.0
  •  2.9-GCCcore-8.3.0


matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.

  •  2.2.3-intel-2018b-Python-2.7.15


Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.

  •  17.0.2-foss-2017a
  •  17.2.5-foss-2017b
  •  17.3.6-intel-2018a
  •  18.1.1-foss-2018b
  •  18.1.1-intel-2018b
  •  19.0.1-GCCcore-8.2.0
  •  19.0.1-GCCcore-8.3.0
  •  20.0.2-GCCcore-9.3.0


OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products.

  •  4.0.1-foss-2018b-Python-3.6.6


Pango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.

  •  1.41.1-intel-2018a
  •  1.42.4-foss-2018b


ParaView is a scientific parallel visualizer.

  •  5.4.1-intel-2018a-mpi
  •  5.4.1-foss-2018b-mpi


Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.

  •  0.34.0-GCCcore-6.4.0
  •  0.34.0-GCCcore-7.3.0
  •  0.38.0-GCCcore-8.3.0


Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.

  •  8.6.7-foss-2017b
  •  8.6.8-GCCcore-7.3.0
  •  8.6.9-GCCcore-8.3.0


VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.

  •  1.9.3-foss-2017b-Python-2.7.14


The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.

  •  8.1.1-foss-2018b-Python-2.7.15
  •  8.2.0-foss-2019a-Python-2.7.15


The X Window System (X11) is a windowing system for bitmap displays

  •  20170314-GCCcore-6.3.0
  •  20171023-GCCcore-6.4.0
  •  20180131-GCCcore-6.4.0
  •  20180604-GCCcore-7.3.0
  •  20190311-GCCcore-8.2.0
  •  20190311-GCCcore-8.3.0
  •  20200222-GCCcore-9.3.0


x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.

  •  20170721-GCCcore-6.4.0
  •  20181203-GCCcore-7.3.0
  •  20190413-GCCcore-8.2.0


x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.

  •  2.6-GCCcore-6.4.0
  •  2.9-GCCcore-7.3.0
  •  3.0-GCCcore-8.2.0


The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.

  •  1.2.2-GCCcore-6.4.0