Magerit-3

Magerit-3

Magerit es un clúster compuesto por 68 nodos Lenovo ThinkSystem SD530 cada uno de los cuales dispone de 2  procesadores Intel Xeon Gold 6230 de 20 cores @ 2.10 GHz (1.344 GFLOPS), 192 GB de RAM y 480 GB de SSD local.

Los nodos están interconectados por dos redes 25 Gbps de baja latencia una de ellas con arquitectura flat-tree destinada en exclusiva al paso de mensajes.

La práctica totalidad de la pila de software es Open-Source, empezando por el Sistema Operativo (CentOS), el gestor y planificador de recursos (SLURM), el sistema de gestión de aplicaciones (Lmod) y la gran parte del software instalado y todos los sistemas auxiliares necesarios. Esto hace que el sistema sea lo más parecido a lo que puede utilizar cualquier investigación facilitando el salto a la infraestructura.

Magerit3
 Nivel de ocupación medio 
# Procesadores: 2.720  cores
Memoria: 13.056  GB
Potencia: 182,78  TFLOPS Rpeak

Todos los nodos tienen acceso a un sistema de almacenamiento compartido basado en Lustre

Software

El sistema tiene una amplia variedad de software preinstalado y listo para utilizar, que día a día se amplía. Si se necesita un software que no aparece en la relación adjunta, solicítelo al Centro de Atención a Usuarios (CAU) y se analizará la viabilidad de su implantación.

Dentro del catálogo existe software que necesita licencia o es un producto comercializado. Todo grupo de investigación que necesite acceder a este tipo de software o requiera se instale uno nuevo, deberá acreditar que dispone de licencia que le autoriza para su instalación en las infraestructuras del CeSViMa.

Bioinformatics, biology and biomedical

FreeSurfer 

FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.

  •  6.0.1-centos6_x86_64

FSL 

FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.

  •  5.0.11-foss-2018b

GROMACS 

GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI builds.

  •  2016.3-intel-2017a
  •  2018.2-foss-2018b
  •  2018.2-intel-2017b
  •  2019-foss-2018b
  •  4.6.5-intel-2016a

MRtrix 

MRtrix provides a set of tools to perform diffusion-weighted MR white-matter tractography in a manner robust to crossing fibres, using constrained spherical deconvolution (CSD) and probabilistic streamlines.

  •  3.0_RC2-foss-2017a-Python-2.7.13

Chemistry, Computational Chemistry and Quantum Chemistry

LAMMPS 

LAMMPS (Large-scale Atomic/Molecular Massively Parallel Simulator) is a classical molecular dynamics simulation code designed to run efficiently on parallel computers.

  •  7Aug19-GCCcore-7.2.0

libctl 

libctl is a free Guile-based library implementing flexible control files for scientific simulations.

  •  3.2.2-foss-2018b

NAMD 

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.

  •  2.12-intel-2017b-mpi
  •  2.13-foss-2018b-mpi

ORCA 

ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- and multireference correlated ab initio methods. It can also treat environmental and relativistic effects.

  •  4.1.0-OpenMPI-3.1.3

Q6 

Q is a set of Molecular Dynamics (MD) tools tailored to the following specific kinds of free energy calculations: Free Energy Perturbation (FEP) Empirical Valence Bond (EVB) Linear Interaction Energies (LIE)

  •  20180205-foss-2019a
  •  20180205-gompi-2019a
  •  20180205-gompi-2019b

Compilers

GCC 

The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).

  •  4.9.4-2.25
  •  6.3.0-2.27
  •  6.4.0-2.28
  •  7.3.0-2.30
  •  8.2.0-2.31.1
  •  8.3.0

GCCcore 

The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).

  •  4.9.3
  •  4.9.4
  •  6.3.0
  •  6.4.0
  •  7.2.0
  •  7.3.0
  •  8.2.0
  •  8.3.0

icc 

Intel C and C++ compilers

  •  2016.1.150-GCC-4.9.3-2.25
  •  2016.2.181-GCC-4.9.3-2.25
  •  2017.1.132-GCC-6.3.0-2.27
  •  2017.4.196-GCC-6.4.0-2.28
  •  2018.1.163-GCC-6.4.0-2.28
  •  2018.3.222-GCC-7.3.0-2.30
  •  2019.1.144-GCC-8.2.0-2.31.1

ifort 

Intel Fortran compiler

  •  2016.1.150-GCC-4.9.3-2.25
  •  2016.2.181-GCC-4.9.3-2.25
  •  2017.1.132-GCC-6.3.0-2.27
  •  2017.4.196-GCC-6.4.0-2.28
  •  2018.1.163-GCC-6.4.0-2.28
  •  2018.3.222-GCC-7.3.0-2.30
  •  2019.1.144-GCC-8.2.0-2.31.1

LLVM 

The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.

  •  4.0.0-foss-2017a
  •  4.0.0-foss-2018b
  •  5.0.0-foss-2017b
  •  5.0.1-GCCcore-6.4.0
  •  6.0.0-GCCcore-7.3.0

Computer Aided Engineering (incl. CFD)

Nek5000 

a fast and scalable high-order solver for computational fluid dynamics

  •  17.0-intel-2018a

OpenFOAM 

OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.

  •  6-intel-2018a
  •  v1806-foss-2018b
  •  v1812-foss-2018b

STAR-CCM+ 

STAR-CCM+ is a complete multidisciplinary platform for the simulation of products and designs operating under real-world conditions.

  •  13.02.011
  •  14.04.011

Data management & processing tools

GDAL 

GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.

  •  2.2.3-foss-2018b-Python-3.6.6
  •  2.2.3-intel-2018b-Python-3.6.6

h5py 

HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.

  •  2.7.1-intel-2018a-Python-3.6.4
  •  2.8.0-foss-2018b-Python-3.6.6
  •  2.9.0-foss-2019a

HDF5 

HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.

  •  1.10.1-foss-2017b
  •  1.10.1-intel-2017b
  •  1.10.1-intel-2018a
  •  1.10.2-foss-2018b
  •  1.10.2-intel-2018b
  •  1.10.5-gompi-2019a
  •  1.10.5-iimpi-2019a
  •  1.8.17-foss-2018b

LAME 

LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.

  •  3.100-GCCcore-6.4.0
  •  3.100-GCCcore-7.3.0

netCDF 

NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.

  •  4.4.1.1-intel-2017b
  •  4.5.0-foss-2017b
  •  4.5.0-intel-2017b
  •  4.6.1-foss-2018b
  •  4.6.1-intel-2018b

netCDF-Fortran 

NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.

  •  4.4.4-intel-2017b

XML-Parser 

This is a Perl extension interface to James Clark's XML parser, expat.

  •  2.44_01-GCCcore-6.3.0-Perl-5.24.1
  •  2.44_01-GCCcore-6.4.0-Perl-5.26.0
  •  2.44_01-GCCcore-6.4.0-Perl-5.26.1
  •  2.44_01-GCCcore-7.3.0-Perl-5.24.1
  •  2.44_01-GCCcore-7.3.0-Perl-5.28.0

Debuggers

Valgrind 

Valgrind: Debugging and profiling tools

  •  3.13.0-intel-2018a

Development tools

ant 

Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.

  •  1.10.5-Java-1.8

Autoconf 

Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.

  •  2.69
  •  2.69-foss-2018b
  •  2.69-GCCcore-6.3.0
  •  2.69-GCCcore-6.4.0
  •  2.69-GCCcore-7.3.0
  •  2.69-GCCcore-8.2.0
  •  2.69-GCCcore-8.3.0

Automake 

Automake: GNU Standards-compliant Makefile generator

  •  1.15
  •  1.15.1-GCCcore-6.4.0
  •  1.15-foss-2018b
  •  1.15-GCCcore-6.3.0
  •  1.15-GCCcore-7.3.0
  •  1.16.1-GCCcore-7.3.0
  •  1.16.1-GCCcore-8.2.0
  •  1.16.1-GCCcore-8.3.0

Autotools 

This bundle collect the standard GNU build tools: Autoconf, Automake and libtool

  •  20150215
  •  20150215-foss-2018b
  •  20150215-GCCcore-6.3.0
  •  20150215-GCCcore-7.3.0
  •  20170619-GCCcore-6.4.0
  •  20180311-GCCcore-7.3.0
  •  20180311-GCCcore-8.2.0
  •  20180311-GCCcore-8.3.0

Bazel 

Bazel is a build tool that builds code quickly and reliably. It is used to build the majority of Google's software.

  •  0.11.1-GCCcore-6.4.0
  •  0.18.0-GCCcore-7.3.0
  •  0.20.0-GCCcore-8.2.0

Boost 

Boost provides free peer-reviewed portable C++ source libraries.

  •  1.66.0-intel-2018a
  •  1.67.0-foss-2018b
  •  1.70.0-gompi-2019a
  •  1.70.0-iimpi-2019a

CMake 

CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.

  •  3.10.2-GCCcore-6.4.0
  •  3.11.1-GCCcore-6.4.0
  •  3.11.4-GCCcore-7.3.0
  •  3.12.1-GCCcore-7.2.0
  •  3.12.1-GCCcore-7.3.0
  •  3.13.3-GCCcore-8.2.0
  •  3.5.2-intel-2016a
  •  3.7.2-GCCcore-6.3.0
  •  3.7.2-GCCcore-6.4.0
  •  3.7.2-GCCcore-7.3.0
  •  3.9.1-GCCcore-6.4.0
  •  3.9.4-GCCcore-6.4.0
  •  3.9.5-GCCcore-6.4.0

DBus 

D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle, it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed.

  •  1.13.6-GCCcore-7.3.0

Doxygen 

Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.

  •  1.8.13-GCCcore-6.4.0
  •  1.8.14-GCCcore-7.3.0

GObject-Introspection 

GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.

  •  1.54.1-foss-2018b-Python-2.7.15
  •  1.54.1-intel-2018a-Python-2.7.14

gperf 

GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.

  •  3.1-GCCcore-6.4.0
  •  3.1-GCCcore-7.3.0

intltool 

intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.

  •  0.51.0-GCCcore-6.3.0-Perl-5.24.1
  •  0.51.0-GCCcore-6.4.0-Perl-5.26.0
  •  0.51.0-GCCcore-6.4.0-Perl-5.26.1
  •  0.51.0-GCCcore-7.3.0-Perl-5.24.1
  •  0.51.0-GCCcore-7.3.0-Perl-5.28.0

M4 

GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.

  •  1.4.17
  •  1.4.17-foss-2018b
  •  1.4.17-GCCcore-4.9.3
  •  1.4.17-GCCcore-4.9.4
  •  1.4.18
  •  1.4.18-GCCcore-6.3.0
  •  1.4.18-GCCcore-6.4.0
  •  1.4.18-GCCcore-7.2.0
  •  1.4.18-GCCcore-7.3.0
  •  1.4.18-GCCcore-8.2.0
  •  1.4.18-GCCcore-8.3.0

Mako 

A super-fast templating language that borrows the best ideas from the existing templating languages

  •  1.0.6-foss-2017a-Python-2.7.13
  •  1.0.6-foss-2018b-Python-2.7.13
  •  1.0.7-foss-2017b-Python-2.7.14
  •  1.0.7-foss-2018b-Python-2.7.15
  •  1.0.7-intel-2018a-Python-2.7.14
  •  1.0.7-intel-2018b-Python-2.7.15

ncurses 

The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.

  •  6.0
  •  6.0-GCCcore-6.3.0
  •  6.0-GCCcore-6.4.0
  •  6.0-GCCcore-7.3.0
  •  6.0-intel-2016a
  •  6.1-GCCcore-6.4.0
  •  6.1-GCCcore-7.2.0
  •  6.1-GCCcore-7.3.0
  •  6.1-GCCcore-8.2.0

PCRE 

The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.

  •  8.40-GCCcore-6.3.0
  •  8.41-GCCcore-6.4.0
  •  8.41-GCCcore-7.3.0

pkg-config 

pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries).

  •  0.29.1-foss-2017a
  •  0.29.1-foss-2018b
  •  0.29.1-GCCcore-6.3.0
  •  0.29.1-GCCcore-7.3.0
  •  0.29.2-GCCcore-6.3.0
  •  0.29.2-GCCcore-6.4.0
  •  0.29.2-GCCcore-7.3.0
  •  0.29.2-GCCcore-8.2.0

pkgconfig 

pkgconfig is a Python module to interface with the pkg-config command line tool

  •  1.3.1-foss-2018b-Python-3.6.6
  •  1.3.1-intel-2018a-Python-3.6.4
  •  1.5.1-GCCcore-8.2.0-python

protobuf 

Google Protocol Buffers

  •  3.6.1.2-GCCcore-8.2.0
  •  3.6.1-GCCcore-7.3.0

Qt 

Qt is a comprehensive cross-platform C++ application framework.

  •  4.8.7-foss-2017a
  •  4.8.7-intel-2018a

Qt5 

Qt is a comprehensive cross-platform C++ application framework.

  •  5.10.1-foss-2018b
  •  5.10.1-intel-2018a

SQLite 

SQLite: SQL Database Engine in a C Library

  •  3.17.0-GCCcore-6.3.0
  •  3.17.0-GCCcore-7.3.0
  •  3.20.1-GCCcore-6.4.0
  •  3.21.0-GCCcore-6.4.0
  •  3.24.0-GCCcore-7.3.0
  •  3.27.2-GCCcore-8.2.0

SWIG 

SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.

  •  3.0.12-foss-2018b-Python-3.6.6
  •  3.0.12-intel-2018b-Python-3.6.6

texinfo 

Texinfo is the official documentation format of the GNU project.

  •  6.5-GCCcore-7.3.0

xorg-macros 

X.org macros utilities.

  •  1.19.1-GCCcore-6.4.0
  •  1.19.2-GCCcore-7.3.0
  •  1.19.2-GCCcore-8.2.0
  •  1.19.2-GCCcore-8.3.0

Earth Sciences

WRF 

The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs.

  •  3.9.1.1-intel-2017b-dmpar

EasyBuild toolchains

foss 

GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.

  •  2017a
  •  2017b
  •  2018b
  •  2019a

gompi 

GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.

  •  2017a
  •  2017b
  •  2018b
  •  2019a
  •  2019b

iccifort 

Intel C, C++ & Fortran compilers

  •  2016.1.150-GCC-4.9.3-2.25
  •  2016.2.181-GCC-4.9.3-2.25
  •  2017.1.132-GCC-6.3.0-2.27
  •  2017.4.196-GCC-6.4.0-2.28
  •  2018.1.163-GCC-6.4.0-2.28
  •  2018.3.222-GCC-7.3.0-2.30
  •  2019.1.144-GCC-8.2.0-2.31.1

iimpi 

Intel C/C++ and Fortran compilers, alongside Intel MPI.

  •  2016.02-GCC-4.9.3-2.25
  •  2017a
  •  2017b
  •  2018a
  •  2018b
  •  2019a
  •  8.1.5-GCC-4.9.3-2.25

intel 

Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).

  •  2016.02-GCC-4.9
  •  2016a
  •  2017a
  •  2017b
  •  2018a
  •  2018b
  •  2019a

iomkl 

Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.

  •  2019.01

iompi 

Intel C/C++ and Fortran compilers, alongside Open MPI.

  •  2019.01

General purpose libraries

ACTC 

ACTC converts independent triangles into triangle strips or fans.

  •  1.1-GCCcore-6.4.0

freeglut 

freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library.

  •  3.0.0-foss-2018b
  •  3.0.0-intel-2018a

gc 

The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new.

  •  7.4.4-foss-2018b

ICU 

ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.

  •  61.1-GCCcore-7.3.0

libdrm 

Direct Rendering Manager runtime library.

  •  2.4.76-GCCcore-6.3.0
  •  2.4.88-GCCcore-6.4.0
  •  2.4.91-GCCcore-6.4.0
  •  2.4.92-GCCcore-7.3.0

libffi 

The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.

  •  3.2.1-foss-2018b
  •  3.2.1-GCCcore-6.3.0
  •  3.2.1-GCCcore-6.4.0
  •  3.2.1-GCCcore-7.3.0
  •  3.2.1-GCCcore-8.2.0

libgd 

GD is an open source code library for the dynamic creation of images by programmers.

  •  2.2.5-GCCcore-7.3.0
  •  2.2.5-intel-2018a

libgeotiff 

Library for reading and writing coordinate system information from/to GeoTIFF files

  •  1.4.2-foss-2018b
  •  1.4.2-intel-2018b

libjpeg-turbo 

libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.

  •  1.5.2-GCCcore-6.4.0
  •  1.5.3-GCCcore-6.4.0
  •  2.0.0-GCCcore-7.3.0

libpng 

libpng is the official PNG reference library

  •  1.6.29-GCCcore-6.3.0
  •  1.6.29-GCCcore-7.3.0
  •  1.6.32-GCCcore-6.4.0
  •  1.6.34-GCCcore-6.4.0
  •  1.6.34-GCCcore-7.3.0

libreadline 

The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.

  •  7.0-GCCcore-6.3.0
  •  7.0-GCCcore-6.4.0
  •  7.0-GCCcore-7.3.0
  •  8.0-GCCcore-8.2.0

libsndfile 

Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.

  •  1.0.28-GCCcore-7.3.0

LibTIFF 

tiff: Library and tools for reading and writing TIFF data files

  •  4.0.9-GCCcore-6.4.0
  •  4.0.9-GCCcore-7.3.0
  •  4.0.9-intel-2018b

libtool 

GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.

  •  2.4.6
  •  2.4.6-foss-2018b
  •  2.4.6-GCCcore-6.3.0
  •  2.4.6-GCCcore-6.4.0
  •  2.4.6-GCCcore-7.3.0
  •  2.4.6-GCCcore-8.2.0
  •  2.4.6-GCCcore-8.3.0

libunistring 

This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.

  •  0.9.3-foss-2018b

libunwind 

The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications

  •  1.2.1-GCCcore-7.3.0

libxml2 

Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).

  •  2.9.4-GCCcore-6.3.0
  •  2.9.4-GCCcore-6.4.0
  •  2.9.4-GCCcore-7.3.0
  •  2.9.7-GCCcore-6.4.0
  •  2.9.8-GCCcore-7.3.0
  •  2.9.8-GCCcore-8.2.0
  •  2.9.9-GCCcore-8.3.0

libyaml 

LibYAML is a YAML parser and emitter written in C.

  •  0.1.7-GCCcore-6.4.0
  •  0.2.1-GCCcore-7.3.0

nettle 

Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.

  •  3.3-GCCcore-6.3.0
  •  3.3-GCCcore-6.4.0
  •  3.3-GCCcore-7.3.0
  •  3.4-foss-2018b
  •  3.4-intel-2018a
  •  3.4-intel-2018b

NSPR 

Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.

  •  4.20-GCCcore-7.3.0

NSS 

Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.

  •  3.39-GCCcore-7.3.0

PROJ 

Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates

  •  5.0.0-foss-2018b
  •  5.0.0-intel-2018b

PyYAML 

PyYAML is a YAML parser and emitter for the Python programming language.

  •  3.12-intel-2018a-Python-3.6.4
  •  3.13-foss-2018b-Python-3.6.6

SDL2 

SDL: Simple DirectMedia Layer, a cross-platform multimedia library

  •  2.0.9-intel-2018b

TensorFlow 

An open-source software library for Machine Intelligence

  •  1.12.0-foss-2018b-Python-3.6.6
  •  1.13.1-foss-2019a-Python-3.7.2
  •  1.8.0-intel-2018a-Python-3.6.4

zlib 

zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.

  •  1.2.11
  •  1.2.11-GCCcore-6.3.0
  •  1.2.11-GCCcore-6.4.0
  •  1.2.11-GCCcore-7.2.0
  •  1.2.11-GCCcore-7.3.0
  •  1.2.11-GCCcore-8.2.0
  •  1.2.11-GCCcore-8.3.0
  •  1.2.8
  •  1.2.8-foss-2018b
  •  1.2.8-GCCcore-4.9.3
  •  1.2.8-GCCcore-4.9.4

General purpose tools

binutils 

binutils: GNU binary utilities

  •  2.25
  •  2.25-GCCcore-4.9.3
  •  2.25-GCCcore-4.9.4
  •  2.27
  •  2.27-GCCcore-6.3.0
  •  2.28
  •  2.28-GCCcore-6.4.0
  •  2.29
  •  2.29-GCCcore-7.2.0
  •  2.30
  •  2.30-GCCcore-7.3.0
  •  2.31.1
  •  2.31.1-GCCcore-8.2.0
  •  2.32
  •  2.32-GCCcore-8.3.0

bzip2 

bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

  •  1.0.6-GCCcore-6.3.0
  •  1.0.6-GCCcore-6.4.0
  •  1.0.6-GCCcore-7.2.0
  •  1.0.6-GCCcore-7.3.0
  •  1.0.6-GCCcore-8.2.0

cURL 

libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.

  •  7.55.1-GCCcore-6.4.0
  •  7.56.0-GCCcore-6.4.0
  •  7.56.1-GCCcore-6.4.0
  •  7.60.0-GCCcore-7.2.0
  •  7.60.0-GCCcore-7.3.0
  •  7.63.0-GCCcore-8.2.0

expat 

Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags)

  •  2.2.0-GCCcore-6.3.0
  •  2.2.0-GCCcore-7.3.0
  •  2.2.4-GCCcore-6.4.0
  •  2.2.5-GCCcore-6.4.0
  •  2.2.5-GCCcore-7.3.0
  •  2.2.6-GCCcore-8.2.0

gettext 

GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation

  •  0.19.8.1
  •  0.19.8.1-GCCcore-6.3.0
  •  0.19.8.1-GCCcore-6.4.0
  •  0.19.8.1-GCCcore-6.4.0-libxml2-2.9.7
  •  0.19.8.1-GCCcore-7.3.0

Ghostscript 

Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.

  •  9.22-GCCcore-6.4.0

help2man 

help2man produces simple manual pages from the '--help' and '--version' output of other commands.

  •  1.47.4
  •  1.47.4-GCCcore-6.3.0
  •  1.47.4-GCCcore-6.4.0
  •  1.47.4-GCCcore-7.2.0
  •  1.47.4-GCCcore-7.3.0
  •  1.47.7-GCCcore-8.2.0
  •  1.47.8-GCCcore-8.3.0

HPL 

HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.

  •  2.3-intel-2019a
  •  2.3-iomkl-2019.01

Inspector 

Intel Inspector XE is an easy to use memory error checker and thread checker for serial and parallel applications

  •  2019_update5

itac 

The Intel Trace Collector is a low-overhead tracing library that performs event-based tracing in applications. The Intel Trace Analyzer provides a convenient way to monitor application activities gathered by the Intel Trace Collector through graphical displays.

  •  2019.2.026

Ninja 

Ninja is a small build system with a focus on speed.

  •  1.9.0-foss-2018b

numactl 

The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.

  •  2.0.11-GCC-6.3.0-2.27
  •  2.0.11-GCCcore-6.3.0
  •  2.0.11-GCCcore-6.4.0
  •  2.0.11-GCCcore-7.3.0
  •  2.0.12-GCCcore-8.2.0
  •  2.0.12-GCCcore-8.3.0

Szip 

Szip compression software, providing lossless compression of scientific data

  •  2.1.1-GCCcore-6.4.0
  •  2.1.1-GCCcore-7.3.0
  •  2.1.1-GCCcore-8.2.0
  •  2.1-foss-2018b

tcsh 

Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.

  •  6.20.00-GCCcore-6.4.0

util-linux 

Set of Linux utilities

  •  2.29.2-GCCcore-6.3.0
  •  2.31.1-GCCcore-6.4.0
  •  2.31-GCCcore-6.4.0
  •  2.32-GCCcore-7.3.0

VTune 

Intel VTune Amplifier XE is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java.

  •  2019_update5

wheel 

A built-package format for Python.

  •  0.30.0-intel-2018a-Python-3.6.4
  •  0.31.1-foss-2018b-Python-3.6.6

XZ 

xz: XZ utilities

  •  5.2.3-GCCcore-6.3.0
  •  5.2.3-GCCcore-6.4.0
  •  5.2.3-GCCcore-7.3.0
  •  5.2.4-GCCcore-7.3.0
  •  5.2.4-GCCcore-8.2.0
  •  5.2.4-GCCcore-8.3.0

High-level mathematical software

Eigen 

Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.

  •  3.3.4

ELPA 

Eigenvalue SoLvers for Petaflop-Applications .

  •  2016.11.001.pre-intel-2018b
  •  2018.11.001-intel-2019a

FreeFem++ 

FreeFem++ is a partial differential equation solver. It has its own language. freefem scripts can solve multiphysics non linear systems in 2D and 3D.

  •  3.61-1-intel-2018a
  •  4.1-intel-2018a-downloaded-deps
  •  4.4.2-foss-2018b-downloaded-deps

GEOS 

GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)

  •  3.6.2-foss-2018b-Python-3.6.6
  •  3.6.2-intel-2018b-Python-3.6.6

GMP 

GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.

  •  6.1.0-foss-2018b
  •  6.1.2-GCCcore-6.3.0
  •  6.1.2-GCCcore-6.4.0
  •  6.1.2-GCCcore-7.3.0
  •  6.1.2-GCCcore-8.2.0

Harminv 

Harminv is a free program (and accompanying library) to solve the problem of harmonic inversion - given a discrete-time, finite-length signal that consists of a sum of finitely-many sinusoids (possibly exponentially decaying) in a given bandwidth, it determines the frequencies, decay constants, amplitudes, and phases of those sinusoids.

  •  1.4-foss-2018b

Keras 

Keras is a minimalist, highly modular neural networks library, written in Python and capable of running on top of either TensorFlow or Theano.

  •  2.2.4-foss-2018b-Python-3.6.6
  •  2.2.4-intel-2018a-Python-3.6.4

libcerf 

libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.

  •  1.5-GCCcore-6.4.0
  •  1.7-GCCcore-7.3.0

MATLAB 

MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran.

  •  2017a
  •  2018b

METIS 

METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.

  •  5.1.0-foss-2018b
  •  5.1.0-GCCcore-6.4.0
  •  5.1.0-GCCcore-8.2.0

MPFR 

The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.

  •  4.0.1-GCCcore-6.4.0
  •  4.0.1-GCCcore-7.3.0

ParMETIS 

ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.

  •  4.0.3-gompi-2019a
  •  4.0.3-iimpi-2019a
  •  4.0.3-intel-2018a

SCOTCH 

Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.

  •  6.0.6-foss-2018b
  •  6.0.6-gompi-2019a
  •  6.0.6-iimpi-2019a
  •  6.0.6-intel-2018a

Theano 

Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently.

  •  1.0.2-intel-2018a-Python-3.6.4
  •  1.0.3-foss-2018b-Python-3.6.6

Languages and programming aids

Bison 

Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

  •  3.0.4
  •  3.0.4-GCCcore-4.9.3
  •  3.0.4-GCCcore-4.9.4
  •  3.0.4-GCCcore-6.3.0
  •  3.0.4-GCCcore-6.4.0
  •  3.0.4-GCCcore-7.2.0
  •  3.0.4-GCCcore-7.3.0
  •  3.0.5
  •  3.0.5-GCCcore-6.4.0
  •  3.0.5-GCCcore-7.2.0
  •  3.0.5-GCCcore-7.3.0
  •  3.0.5-GCCcore-8.2.0
  •  3.3.2
  •  3.3.2-GCCcore-8.3.0

flex 

Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.

  •  2.5.39
  •  2.5.39-GCCcore-4.9.3
  •  2.6.0
  •  2.6.0-GCCcore-4.9.4
  •  2.6.3
  •  2.6.3-GCCcore-6.3.0
  •  2.6.3-GCCcore-7.3.0
  •  2.6.4
  •  2.6.4-GCCcore-6.4.0
  •  2.6.4-GCCcore-7.2.0
  •  2.6.4-GCCcore-7.3.0
  •  2.6.4-GCCcore-8.2.0
  •  2.6.4-GCCcore-8.3.0

FriBidi 

The Free Implementation of the Unicode Bidirectional Algorithm.

  •  1.0.2-GCCcore-6.4.0
  •  1.0.5-GCCcore-7.3.0

Guile 

Guile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with plug-ins, modules, or scripts.

  •  2.0.11-foss-2018b

Java 

Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.

  •  1.8.0_121
  •  1.8.0_162
  •  1.8.0_212

Julia 

Julia is a high-level, high-performance dynamic programming language for numerical computing

  •  1.1.1-linux-x86_64

NASM 

NASM: General-purpose x86 assembler

  •  2.13.01-GCCcore-6.4.0
  •  2.13.03-GCCcore-6.4.0
  •  2.13.03-GCCcore-7.3.0

Perl 

Larry Wall's Practical Extraction and Report Language

  •  5.24.1-GCCcore-6.3.0
  •  5.24.1-GCCcore-7.3.0
  •  5.26.0-GCCcore-6.4.0
  •  5.26.1-GCCcore-6.4.0
  •  5.28.0-GCCcore-7.3.0
  •  5.28.1-GCCcore-8.2.0

Python 

Python is a programming language that lets you work more quickly and integrate your systems more effectively.

  •  2.7.13-foss-2017a
  •  2.7.13-foss-2018b
  •  2.7.14-foss-2017b
  •  2.7.14-GCCcore-6.4.0-bare
  •  2.7.14-intel-2018a
  •  2.7.15-foss-2018b
  •  2.7.15-GCCcore-7.3.0-bare
  •  2.7.15-GCCcore-8.2.0
  •  2.7.15-intel-2018b
  •  3.6.4-intel-2018a
  •  3.6.6-foss-2018b
  •  3.6.6-intel-2018b
  •  3.7.2-GCCcore-8.2.0

R is a free software environment for statistical computing and graphics.

  •  3.5.1-foss-2018b
  •  3.5.1-intel-2018b

SciPy-bundle 

Bundle of Python packages for scientific software

  •  2019.03-foss-2019a

Tcl 

Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.

  •  8.6.6-GCCcore-6.3.0
  •  8.6.6-GCCcore-7.3.0
  •  8.6.7-GCCcore-6.4.0
  •  8.6.8-GCCcore-6.4.0
  •  8.6.8-GCCcore-7.3.0
  •  8.6.9-GCCcore-8.2.0

Yasm 

Yasm: Complete rewrite of the NASM assembler with BSD license

  •  1.3.0-GCCcore-6.4.0
  •  1.3.0-GCCcore-7.3.0

MPI stacks

impi 

Intel MPI Library, compatible with MPICH ABI

  •  2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27
  •  2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28
  •  2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28
  •  2018.3.222-iccifort-2018.3.222-GCC-7.3.0-2.30
  •  2018.4.274-iccifort-2019.1.144-GCC-8.2.0-2.31.1
  •  5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25
  •  5.1.3.181-iccifort-2016.2.181-GCC-4.9.3-2.25

OpenMPI 

The Open MPI Project is an open source MPI-3 implementation.

  •  2.0.2-GCC-6.3.0-2.27
  •  2.1.1-GCC-6.4.0-2.28
  •  2.1.2-GCC-6.4.0-2.28
  •  3.1.1-GCC-7.3.0-2.30
  •  3.1.1-iccifort-2018.3.222-GCC-7.3.0-2.30
  •  3.1.3-GCC-8.2.0-2.31.1
  •  3.1.3-iccifort-2019.1.144-GCC-8.2.0-2.31.1
  •  3.1.4-GCC-8.3.0

Numerical Libraries

CGAL 

The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.

  •  4.11.1-foss-2018b-Python-2.7.15
  •  4.11.1-intel-2018a-Python-2.7.14

FFTW 

FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.

  •  3.3.6-gompi-2017a
  •  3.3.6-gompi-2017b
  •  3.3.6-intel-2017b
  •  3.3.8-gompi-2018b
  •  3.3.8-gompi-2019a
  •  3.3.8-intel-2018b

GSL 

The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.

  •  2.1-foss-2018b
  •  2.4-GCCcore-6.4.0
  •  2.5-GCC-7.3.0-2.30
  •  2.5-iccifort-2018.3.222-GCC-7.3.0-2.30

Hypre 

Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.

  •  2.14.0-intel-2018a
  •  2.15.1-foss-2019a
  •  2.15.1-intel-2019a

imkl 

Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.

  •  11.3.1.150-iimpi-8.1.5-GCC-4.9.3-2.25
  •  11.3.2.181-iimpi-2016.02-GCC-4.9.3-2.25
  •  2017.1.132-iimpi-2017a
  •  2017.3.196-iimpi-2017b
  •  2018.1.163-iimpi-2018a
  •  2018.3.222-iimpi-2018b
  •  2019.1.144-iimpi-2019a
  •  2019.1.144-iompi-2019.01

NLopt 

NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.

  •  2.4.2-GCCcore-7.3.0

OpenBLAS 

OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.

  •  0.2.19-GCC-6.3.0-2.27-LAPACK-3.7.0
  •  0.2.20-GCC-6.4.0-2.28
  •  0.3.1-GCC-7.3.0-2.30
  •  0.3.5-GCC-8.2.0-2.31.1

PETSc 

PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.

  •  3.11.1-foss-2019a
  •  3.11.1-intel-2019a
  •  3.9.3-intel-2018a

ScaLAPACK 

The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.

  •  2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.7.0
  •  2.0.2-gompi-2017b-OpenBLAS-0.2.20
  •  2.0.2-gompi-2018b-OpenBLAS-0.3.1
  •  2.0.2-gompi-2019a-OpenBLAS-0.3.5

SuiteSparse 

SuiteSparse is a collection of libraries manipulate sparse matrices.

  •  5.1.2-foss-2018b-METIS-5.1.0
  •  5.1.2-intel-2018a-METIS-5.1.0
  •  5.4.0-foss-2019a-METIS-5.1.0
  •  5.4.0-intel-2019a-METIS-5.1.0

TetGen 

A Quality Tetrahedral Mesh Generator and a 3D Delaunay Triangulator

  •  1.5.0-GCCcore-6.4.0

Performance tools

Advisor 

Vectorization Optimization and Thread Prototyping - Vectorize & thread code or performance “dies” - Easy workflow + data + tips = faster code faster - Prioritize, Prototype & Predict performance gain

  •  2019_update5

Physics and physical systems simulations

Meep 

Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems.

  •  1.3-foss-2018b

UDUNITS 

UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.

  •  2.2.26-foss-2018b
  •  2.2.26-intel-2018b

VASP 

The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from first principles.

  •  5.3.5-intel-2018b
  •  5.3.5.MN-VFM_2017-A-intel-2018b
  •  5.4.4-intel-2016.02-GCC-4.9

System utilities (e.g. highly depending on system OS and hardware)

hwloc 

The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.

  •  1.11.10-GCCcore-7.3.0
  •  1.11.11-GCCcore-8.2.0
  •  1.11.12-GCCcore-8.3.0
  •  1.11.5-GCC-6.3.0-2.27
  •  1.11.7-GCCcore-6.4.0
  •  1.11.8-GCCcore-6.4.0
  •  1.11.8-intel-2017a

libpciaccess 

Generic PCI access library.

  •  0.14-GCCcore-6.4.0
  •  0.14-GCCcore-7.3.0
  •  0.14-GCCcore-8.2.0
  •  0.14-GCCcore-8.3.0

Visualization, plotting, documentation and typesetting

ATK 

ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

  •  2.28.1-foss-2018b

cairo 

Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB

  •  1.14.10-GCCcore-6.4.0
  •  1.14.12-GCCcore-6.4.0
  •  1.14.12-GCCcore-7.3.0

FFmpeg 

A complete, cross-platform solution to record, convert and stream audio and video.

  •  3.4-GCCcore-6.4.0
  •  4.1-foss-2018b

FLTK 

FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.

  •  1.3.4-foss-2017b

fontconfig 

Fontconfig is a library designed to provide system-wide font configuration, customization and application access.

  •  2.12.1-GCCcore-6.3.0-libpng-1.6.29
  •  2.12.1-GCCcore-7.3.0-libpng-1.6.29
  •  2.12.4-GCCcore-6.4.0
  •  2.12.6-GCCcore-6.4.0
  •  2.13.0-GCCcore-7.3.0

freetype 

FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.

  •  2.7.1-GCCcore-6.3.0-libpng-1.6.29
  •  2.7.1-GCCcore-7.3.0-libpng-1.6.29
  •  2.8-GCCcore-6.4.0
  •  2.9.1-GCCcore-7.3.0
  •  2.9-GCCcore-6.4.0

Gdk-Pixbuf 

The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.

  •  2.36.12-foss-2018b

GLib 

GLib is one of the base libraries of the GTK+ project

  •  2.52.0-foss-2017a
  •  2.53.5-GCCcore-6.4.0
  •  2.54.3-GCCcore-6.4.0
  •  2.54.3-GCCcore-7.3.0

gnuplot 

Portable interactive, function plotting utility

  •  5.2.2-intel-2018a
  •  5.2.6-foss-2018b

GTK+ 

The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications.

  •  2.24.32-foss-2018b

HarfBuzz 

HarfBuzz is an OpenType text shaping engine.

  •  1.7.5-intel-2018a
  •  2.2.0-foss-2018b

ImageMagick 

ImageMagick is a software suite to create, edit, compose, or convert bitmap images

  •  7.0.7-15-GCCcore-6.4.0

JasPer 

The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.

  •  2.0.12-GCCcore-6.4.0
  •  2.0.12-intel-2017b
  •  2.0.14-GCCcore-6.4.0
  •  2.0.14-GCCcore-7.3.0

libGLU 

The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.

  •  9.0.0-foss-2017a
  •  9.0.0-foss-2017b
  •  9.0.0-foss-2018b
  •  9.0.0-intel-2018a
  •  9.0.0-intel-2018b

LittleCMS 

Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.

  •  2.8-GCCcore-6.4.0

Mesa 

Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.

  •  17.0.2-foss-2017a
  •  17.2.5-foss-2017b
  •  17.3.6-intel-2018a
  •  18.1.1-foss-2018b
  •  18.1.1-intel-2018b

OpenCV 

OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products.

  •  4.0.1-foss-2018b-Python-3.6.6

Pango 

Pango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.

  •  1.41.1-intel-2018a
  •  1.42.4-foss-2018b

ParaView 

ParaView is a scientific parallel visualizer.

  •  5.4.1-foss-2018b-mpi
  •  5.4.1-intel-2018a-mpi

pixman 

Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.

  •  0.34.0-GCCcore-6.4.0
  •  0.34.0-GCCcore-7.3.0

Tk 

Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.

  •  8.6.7-foss-2017b
  •  8.6.8-GCCcore-7.3.0

VMD 

VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.

  •  1.9.3-foss-2017b-Python-2.7.14

VTK 

The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods, and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.

  •  8.1.1-foss-2018b-Python-2.7.15

X11 

The X Window System (X11) is a windowing system for bitmap displays

  •  20170314-GCCcore-6.3.0
  •  20171023-GCCcore-6.4.0
  •  20180131-GCCcore-6.4.0
  •  20180604-GCCcore-7.3.0

x264 

x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.

  •  20170721-GCCcore-6.4.0
  •  20181203-GCCcore-7.3.0

x265 

x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.

  •  2.6-GCCcore-6.4.0
  •  2.9-GCCcore-7.3.0

xprop 

The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.

  •  1.2.2-GCCcore-6.4.0
JoomShaper